| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710048
Identifier: 218710048
GI number: 218710048
Start: 2219406
End: 2219975
Strand: Direct
Name: 218710048
Synonym: VS_2068
Alternate gene names: NA
Gene position: 2219406-2219975 (Clockwise)
Preceding gene: 218710044
Following gene: 218710049
Centisome position: 67.27
GC content: 42.98
Gene sequence:
>570_bases ATGACAGAACAAGAGTTTTTCACCGTTCACCATAGCCTTACCGCTAATATTGAACCAATGGACAGTAACTTCGCTTTACC TTCTCAGATTCAGTTTGAATCTGAGATCCCTGCCCCTTTTGTTGTGGCAAGTGAGTTTAGCCAATTGGACCTGTTAGCCG ACAGTGCTCGCAACGAACTGAAAAACAGCGACTTGAAGAATGTCATCAGTTTATTGGATGCACAGAACTCTAAATTAAAC CTCTTGTTGAGCTTTATGTTATCGCAACAAGATGATGAACAATTTCGTACCCATACGTATTCATTTGGCGCGAGTCAGTT CTCGTGTTTTTCCAAAACAGATATCGAAGCGGGTCGCTTAGTTAAAGCCAAGCTCTTTATCGAGCACCCTGCCGCCGCTA TCTATTGCTATGCGGAGGTCTTCGCTAGCGAACCTAAAGATTCAGGCTTCGAAATCAAATTCAAATATGCTCATCTTCGT GATACTGACCAAGACTTGTTGATCAAGGCTGCGCTCCATCAACAACAAAAGCTCTTACGTCAACGCTCTCTAGAACGAGA TAACAAGTAA
Upstream 100 bases:
>100_bases TAGCTAACTTTCAAACAACTATTTGAGACTTTCAATTAACTGACCTTGATTACTGCGGCCACATAGCGATAATCAATAGA TCACTTCAAGGAACTAACGC
Downstream 100 bases:
>100_bases ATAGACATGACAAAACAATCCATTTTCACACTACCTAAGCTCAAAGGTGCCGGTGACAAAAAGCACATCGGTAACCTAGT TGGTTCATCTCTCGCGCTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MTEQEFFTVHHSLTANIEPMDSNFALPSQIQFESEIPAPFVVASEFSQLDLLADSARNELKNSDLKNVISLLDAQNSKLN LLLSFMLSQQDDEQFRTHTYSFGASQFSCFSKTDIEAGRLVKAKLFIEHPAAAIYCYAEVFASEPKDSGFEIKFKYAHLR DTDQDLLIKAALHQQQKLLRQRSLERDNK
Sequences:
>Translated_189_residues MTEQEFFTVHHSLTANIEPMDSNFALPSQIQFESEIPAPFVVASEFSQLDLLADSARNELKNSDLKNVISLLDAQNSKLN LLLSFMLSQQDDEQFRTHTYSFGASQFSCFSKTDIEAGRLVKAKLFIEHPAAAIYCYAEVFASEPKDSGFEIKFKYAHLR DTDQDLLIKAALHQQQKLLRQRSLERDNK >Mature_188_residues TEQEFFTVHHSLTANIEPMDSNFALPSQIQFESEIPAPFVVASEFSQLDLLADSARNELKNSDLKNVISLLDAQNSKLNL LLSFMLSQQDDEQFRTHTYSFGASQFSCFSKTDIEAGRLVKAKLFIEHPAAAIYCYAEVFASEPKDSGFEIKFKYAHLRD TDQDLLIKAALHQQQKLLRQRSLERDNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21554; Mature: 21423
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEQEFFTVHHSLTANIEPMDSNFALPSQIQFESEIPAPFVVASEFSQLDLLADSARNEL CCCCCEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCEEECCCHHHHHHHHHHHHHHH KNSDLKNVISLLDAQNSKLNLLLSFMLSQQDDEQFRTHTYSFGASQFSCFSKTDIEAGRL CCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHEECCCCHHHHCCCCCCCCCCE VKAKLFIEHPAAAIYCYAEVFASEPKDSGFEIKFKYAHLRDTDQDLLIKAALHQQQKLLR EEEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH QRSLERDNK HHHHCCCCC >Mature Secondary Structure TEQEFFTVHHSLTANIEPMDSNFALPSQIQFESEIPAPFVVASEFSQLDLLADSARNEL CCCCEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCEEECCCHHHHHHHHHHHHHHH KNSDLKNVISLLDAQNSKLNLLLSFMLSQQDDEQFRTHTYSFGASQFSCFSKTDIEAGRL CCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHEECCCCHHHHCCCCCCCCCCE VKAKLFIEHPAAAIYCYAEVFASEPKDSGFEIKFKYAHLRDTDQDLLIKAALHQQQKLLR EEEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH QRSLERDNK HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA