| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is cadC [C]
Identifier: 218709965
GI number: 218709965
Start: 2130272
End: 2131294
Strand: Reverse
Name: cadC [C]
Synonym: VS_1984
Alternate gene names: 218709965
Gene position: 2131294-2130272 (Counterclockwise)
Preceding gene: 218709966
Following gene: 218709964
Centisome position: 64.6
GC content: 42.03
Gene sequence:
>1023_bases GTGAATCAACAAAACTACCAAATATGTGATGCTAACTATGATCCCTTGCTTAGGCAGTTTATGCGTGAGGATGGCCACGT AGAAACTATCGCGCCGCTAGAAGGTAAAGTGTTCCTATTCTTGCTTGAAAATACAGGCGAATGCATTGAGCGAGGCCTGA TCTTTGATAGATGTTGGGGGGATGTGATTGTCTCTGAGCAAGCGTTGACCAACGTGATATCTAAGCTTAGAAAAACACTG AACAGAGTGACTTGTGGTTGCGCCACGATTCGTACCGTCAGTAAAATGGGGTATTCTCTGGAGATAGAGGAATCATCTCA ACCTCAAAATACAGAGCCTAAAGCGACAGTCCCTGAGGCGGATTTAGTATCAGAGTCTCCTCAAACGATAGGATTATCGC AAGCCGAACTTAACCCATCATCAATAACGACAAATCAAACACAAACCTCAGGCGAGTCACCTGAGAAAAAGCCGCAAGAT GAGCAGGCTCATGTTATGCCTGCATCAGTAACACAAAGCGTTGAAGGCGACATGGAAATGCCATTGTCCACAGTTAGCCC GAGAGGTTCAGTCAACGCGGTACCACCTAGCTTTAAGCTTTTTGTTCATCGTCATTTAGCCTGCATGGGCTACTTTTTAG CCTTTACCTGTGTGTTGATCTCTTTGTTTAATATATTTCAGGCTTACTATCAGCCATTGCCATACTTTGTTGATAAAAAT GAGTATCACGACAGCTTCGTAGATGAAACTAATCACTACTTTTTCCATATTGTTCGCAATGAAGCCTACTCGTTGCCTGC GATCACTGAGAGACTGATACAAGTTATACCTAGCCACTGTAATGTTGATGTTTTTGTTCGCATTTATCCATCTGTCAACC AACCTGAAAATGATGCTTTGTATATGCTGATTGAGAGAAAGGATGGCGAAGCTCTTAATTACTTGTCATCTATTTTTGAA GTTGAGTCATCTTTTGATTCGTTTGTGAATTACATGGCTCAAAGGAGTTACTTTTGCGAATAA
Upstream 100 bases:
>100_bases TTCTCGACGCGAAATAATTGTGTGTAAATTGAAAAATTCACTGGTCATTTATAAACTTTTCAATATTATATGCGACCAAA TTCAAATGTAGACAACGATA
Downstream 100 bases:
>100_bases TTGGTTTGCTATTGGTATTAGCACTCACAGCTGCAAGTTTCATGATTGATAGAAACGTATTAGCGGGCACTCGTTGGCAC TGTAAAACCATCAAAACGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 340; Mature: 340
Protein sequence:
>340_residues MNQQNYQICDANYDPLLRQFMREDGHVETIAPLEGKVFLFLLENTGECIERGLIFDRCWGDVIVSEQALTNVISKLRKTL NRVTCGCATIRTVSKMGYSLEIEESSQPQNTEPKATVPEADLVSESPQTIGLSQAELNPSSITTNQTQTSGESPEKKPQD EQAHVMPASVTQSVEGDMEMPLSTVSPRGSVNAVPPSFKLFVHRHLACMGYFLAFTCVLISLFNIFQAYYQPLPYFVDKN EYHDSFVDETNHYFFHIVRNEAYSLPAITERLIQVIPSHCNVDVFVRIYPSVNQPENDALYMLIERKDGEALNYLSSIFE VESSFDSFVNYMAQRSYFCE
Sequences:
>Translated_340_residues MNQQNYQICDANYDPLLRQFMREDGHVETIAPLEGKVFLFLLENTGECIERGLIFDRCWGDVIVSEQALTNVISKLRKTL NRVTCGCATIRTVSKMGYSLEIEESSQPQNTEPKATVPEADLVSESPQTIGLSQAELNPSSITTNQTQTSGESPEKKPQD EQAHVMPASVTQSVEGDMEMPLSTVSPRGSVNAVPPSFKLFVHRHLACMGYFLAFTCVLISLFNIFQAYYQPLPYFVDKN EYHDSFVDETNHYFFHIVRNEAYSLPAITERLIQVIPSHCNVDVFVRIYPSVNQPENDALYMLIERKDGEALNYLSSIFE VESSFDSFVNYMAQRSYFCE >Mature_340_residues MNQQNYQICDANYDPLLRQFMREDGHVETIAPLEGKVFLFLLENTGECIERGLIFDRCWGDVIVSEQALTNVISKLRKTL NRVTCGCATIRTVSKMGYSLEIEESSQPQNTEPKATVPEADLVSESPQTIGLSQAELNPSSITTNQTQTSGESPEKKPQD EQAHVMPASVTQSVEGDMEMPLSTVSPRGSVNAVPPSFKLFVHRHLACMGYFLAFTCVLISLFNIFQAYYQPLPYFVDKN EYHDSFVDETNHYFFHIVRNEAYSLPAITERLIQVIPSHCNVDVFVRIYPSVNQPENDALYMLIERKDGEALNYLSSIFE VESSFDSFVNYMAQRSYFCE
Specific function: Required For Pcad Induction, A Promoter Upstream Of Cadb That Is Responsible For The Ph-Regulated Expression Of Cada. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38575; Mature: 38575
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQQNYQICDANYDPLLRQFMREDGHVETIAPLEGKVFLFLLENTGECIERGLIFDRCWG CCCCCCEEECCCCCHHHHHHHHCCCCEEEECCCCCCEEEEEECCCHHHHHHCCHHHHHHH DVIVSEQALTNVISKLRKTLNRVTCGCATIRTVSKMGYSLEIEESSQPQNTEPKATVPEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCH DLVSESPQTIGLSQAELNPSSITTNQTQTSGESPEKKPQDEQAHVMPASVTQSVEGDMEM HHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCHHHHHHCCCCCCC PLSTVSPRGSVNAVPPSFKLFVHRHLACMGYFLAFTCVLISLFNIFQAYYQPLPYFVDKN CCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC EYHDSFVDETNHYFFHIVRNEAYSLPAITERLIQVIPSHCNVDVFVRIYPSVNQPENDAL CHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEE YMLIERKDGEALNYLSSIFEVESSFDSFVNYMAQRSYFCE EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNQQNYQICDANYDPLLRQFMREDGHVETIAPLEGKVFLFLLENTGECIERGLIFDRCWG CCCCCCEEECCCCCHHHHHHHHCCCCEEEECCCCCCEEEEEECCCHHHHHHCCHHHHHHH DVIVSEQALTNVISKLRKTLNRVTCGCATIRTVSKMGYSLEIEESSQPQNTEPKATVPEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCH DLVSESPQTIGLSQAELNPSSITTNQTQTSGESPEKKPQDEQAHVMPASVTQSVEGDMEM HHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCHHHHHHCCCCCCC PLSTVSPRGSVNAVPPSFKLFVHRHLACMGYFLAFTCVLISLFNIFQAYYQPLPYFVDKN CCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC EYHDSFVDETNHYFFHIVRNEAYSLPAITERLIQVIPSHCNVDVFVRIYPSVNQPENDAL CHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEE YMLIERKDGEALNYLSSIFEVESSFDSFVNYMAQRSYFCE EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA