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The map label for this gene is yciO [H]

Identifier: 218709945

GI number: 218709945

Start: 2107149

End: 2107769

Strand: Reverse

Name: yciO [H]

Synonym: VS_1963

Alternate gene names: 218709945

Gene position: 2107769-2107149 (Counterclockwise)

Preceding gene: 218709946

Following gene: 218709944

Centisome position: 63.89

GC content: 45.73

Gene sequence:

>621_bases
ATGAGCCAGTTTTTTTATGTACACCCAGATAACCCACAAGCGCGCTTAATTACTCAAGCGGTTGCGATTATTCGCAATGG
CGGCGTTGTGGTTTATCCAACAGATTCAGGTTATGCACTGGGTTGTCAGCTTGAAAATAAACAAGCACTCGAACGCATCT
GTAAAATTCGTCGAATCGATGATAAGCACAATTTCACTTTGTTATGCCGTGATCTTTCTGAGTTGTCACTGTATGCACGA
GTAGATAACGTGGCTTTCCGTTTGCTTAAGGCGCACACGCCAGGTGCTTACACGTTTATTTTCAAAGCAACAAAAGAAGT
GCCAAAGCGTTTGATGAACGCTAAGCGTAAAACGATCGGTATTCGTGTACCGGACAACAAAATTGCCCTAGATCTTCTAG
AAGCAATGGGCGAGCCATTGATGTCGACGTCTCTGATTCTTCCGGGTAACGAGACCACTGAATCGGATCCAGAAGAAATT
CGCGACAGCCTAGAGCATGCGGTTGATGTCATTTTGAATGGCGGCTACTTAGGTGAACAACCAACCACGGTTATTGACTT
CAGTGACGATGACGCCGTTGTTTTACGTCGTGGTGCCGGTGATCCAGCGCCGTTTGAATAA

Upstream 100 bases:

>100_bases
AAGATTGGGAGTTTCAAACGGTTTCACCATCTGAATAGTCTTTAGGTGAACCAGCTCCTTCTGATGATAGAGTCGAGAGA
TTCGATAGCGAGGATCAACA

Downstream 100 bases:

>100_bases
TAGCGTTACTGATTAACAGTCTGTAACGAAACAGCAAACCTGCCACAGTAAATAACAAGTGCTTTTTGGCAGGTTATTTG
CGATAATACGCGACCGCGAT

Product: translation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSQFFYVHPDNPQARLITQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLSELSLYAR
VDNVAFRLLKAHTPGAYTFIFKATKEVPKRLMNAKRKTIGIRVPDNKIALDLLEAMGEPLMSTSLILPGNETTESDPEEI
RDSLEHAVDVILNGGYLGEQPTTVIDFSDDDAVVLRRGAGDPAPFE

Sequences:

>Translated_206_residues
MSQFFYVHPDNPQARLITQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLSELSLYAR
VDNVAFRLLKAHTPGAYTFIFKATKEVPKRLMNAKRKTIGIRVPDNKIALDLLEAMGEPLMSTSLILPGNETTESDPEEI
RDSLEHAVDVILNGGYLGEQPTTVIDFSDDDAVVLRRGAGDPAPFE
>Mature_205_residues
SQFFYVHPDNPQARLITQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLSELSLYARV
DNVAFRLLKAHTPGAYTFIFKATKEVPKRLMNAKRKTIGIRVPDNKIALDLLEAMGEPLMSTSLILPGNETTESDPEEIR
DSLEHAVDVILNGGYLGEQPTTVIDFSDDDAVVLRRGAGDPAPFE

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=70.7317073170732, Blast_Score=317, Evalue=4e-88,
Organism=Escherichia coli, GI2367210, Length=181, Percent_Identity=23.7569060773481, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22915; Mature: 22784

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYVHPDNPQARLITQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICKIRRID
CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHCCC
DKHNFTLLCRDLSELSLYARVDNVAFRLLKAHTPGAYTFIFKATKEVPKRLMNAKRKTIG
CCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCHHHEEE
IRVPDNKIALDLLEAMGEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGYLGEQ
EECCCCHHHHHHHHHCCCCHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCC
PTTVIDFSDDDAVVLRRGAGDPAPFE
CCEEEEECCCCEEEEEECCCCCCCCC
>Mature Secondary Structure 
SQFFYVHPDNPQARLITQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICKIRRID
CCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHCCC
DKHNFTLLCRDLSELSLYARVDNVAFRLLKAHTPGAYTFIFKATKEVPKRLMNAKRKTIG
CCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCHHHEEE
IRVPDNKIALDLLEAMGEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGYLGEQ
EECCCCHHHHHHHHHCCCCHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCC
PTTVIDFSDDDAVVLRRGAGDPAPFE
CCEEEEECCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]