Click here to switch to the map view.

The map label for this gene is nrfC [H]

Identifier: 218709918

GI number: 218709918

Start: 2074192

End: 2074878

Strand: Reverse

Name: nrfC [H]

Synonym: VS_1931

Alternate gene names: 218709918

Gene position: 2074878-2074192 (Counterclockwise)

Preceding gene: 218709919

Following gene: 218709917

Centisome position: 62.89

GC content: 45.27

Gene sequence:

>687_bases
ATGAGCTGCTCAAGAAGAAACTTTTTAGCAGGCGCTGGTGCCGTTATTTTTACCACGGGTGTAGCGGGAACTGCGGCGGT
GACAAGTCGTAAAACGTTAGCCAATGTTCAAGAAGATGGTGCTAAACGTTATGGAATGATTCATGACGAAACCGCGTGTA
TTGGTTGTACTGCTTGTACAGAAGCATGTCGTGAAGTGAATAAAGTGCCTGAAGGCGTGTCGCGCTTAGAAATTATTAAG
AGCGAACCCCAAGGCGAATATCCAAATGTTGATTACCGTTTTACTCGTAACTCTTGCCAACATTGTGATAACGCGCCGTG
TGTCATGGTTTGCCCAACAGGTGCAGCCTACAAAGATGAAAAAACCGGCATTGTCGACGTTCATCAAGAGAAGTGTGTCG
GTTGTGGTTACTGTTTGTTAGCGTGTCCATATCAAGTGCGCTTTTTCCATCCAGAGAACAAGTCAGCCGATAAATGTAAC
TTCTGTCGTGATACCAATCTAGCACAAGGGAAGTTGCCTGCTTGTGTCGAATCTTGCCCAACCAAAGCGCTGACATTCGG
CGATTTGAATGACCCTAAGAGTGAGATAAACCAAGTACTTCAATCCGAGGTGGTTTACAGAGATAAAGCCTATCTAGGCA
CCCAACCAAAACTCTATAAAGTGCCACACCAAAAAGGGGAGATTTGA

Upstream 100 bases:

>100_bases
GACTGAAGCAAAGGTGTTGGGCTTAGATAAAAAGCAAACCATTAAGCTGTGTGTGGATTGCCATTCAGACTTCAACCAGA
AGAAAGAAGGGGAGTAATCT

Downstream 100 bases:

>100_bases
TTATGAGTGCATGGGACGCAGCTTTTCAGTCTGGTACCGTGGTATGGGACTGGATTATAGCAATCTATCTATTTCTCGCG
GGGATGTCGGCGGGTGCCGT

Product: hypothetical protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSCSRRNFLAGAGAVIFTTGVAGTAAVTSRKTLANVQEDGAKRYGMIHDETACIGCTACTEACREVNKVPEGVSRLEIIK
SEPQGEYPNVDYRFTRNSCQHCDNAPCVMVCPTGAAYKDEKTGIVDVHQEKCVGCGYCLLACPYQVRFFHPENKSADKCN
FCRDTNLAQGKLPACVESCPTKALTFGDLNDPKSEINQVLQSEVVYRDKAYLGTQPKLYKVPHQKGEI

Sequences:

>Translated_228_residues
MSCSRRNFLAGAGAVIFTTGVAGTAAVTSRKTLANVQEDGAKRYGMIHDETACIGCTACTEACREVNKVPEGVSRLEIIK
SEPQGEYPNVDYRFTRNSCQHCDNAPCVMVCPTGAAYKDEKTGIVDVHQEKCVGCGYCLLACPYQVRFFHPENKSADKCN
FCRDTNLAQGKLPACVESCPTKALTFGDLNDPKSEINQVLQSEVVYRDKAYLGTQPKLYKVPHQKGEI
>Mature_227_residues
SCSRRNFLAGAGAVIFTTGVAGTAAVTSRKTLANVQEDGAKRYGMIHDETACIGCTACTEACREVNKVPEGVSRLEIIKS
EPQGEYPNVDYRFTRNSCQHCDNAPCVMVCPTGAAYKDEKTGIVDVHQEKCVGCGYCLLACPYQVRFFHPENKSADKCNF
CRDTNLAQGKLPACVESCPTKALTFGDLNDPKSEINQVLQSEVVYRDKAYLGTQPKLYKVPHQKGEI

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=228, Percent_Identity=62.280701754386, Blast_Score=305, Evalue=1e-84,
Organism=Escherichia coli, GI226510944, Length=220, Percent_Identity=45.9090909090909, Blast_Score=196, Evalue=9e-52,
Organism=Escherichia coli, GI1789370, Length=261, Percent_Identity=32.9501915708812, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790326, Length=181, Percent_Identity=30.939226519337, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787872, Length=156, Percent_Identity=37.8205128205128, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI1787122, Length=156, Percent_Identity=37.1794871794872, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787749, Length=185, Percent_Identity=29.1891891891892, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787740, Length=128, Percent_Identity=32.03125, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI2367245, Length=159, Percent_Identity=35.2201257861635, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787478, Length=104, Percent_Identity=34.6153846153846, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789067, Length=163, Percent_Identity=32.5153374233129, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787963, Length=155, Percent_Identity=27.741935483871, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788811, Length=155, Percent_Identity=29.6774193548387, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082180, Length=138, Percent_Identity=34.0579710144928, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082179, Length=164, Percent_Identity=29.2682926829268, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789079, Length=182, Percent_Identity=30.2197802197802, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24949; Mature: 24817

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
7.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
8.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCSRRNFLAGAGAVIFTTGVAGTAAVTSRKTLANVQEDGAKRYGMIHDETACIGCTACT
CCCCCCCHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHH
EACREVNKVPEGVSRLEIIKSEPQGEYPNVDYRFTRNSCQHCDNAPCVMVCPTGAAYKDE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHCCCCCCCEEEECCCCCCCCCC
KTGIVDVHQEKCVGCGYCLLACPYQVRFFHPENKSADKCNFCRDTNLAQGKLPACVESCP
CCCEEEECHHHHCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
TKALTFGDLNDPKSEINQVLQSEVVYRDKAYLGTQPKLYKVPHQKGEI
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC
>Mature Secondary Structure 
SCSRRNFLAGAGAVIFTTGVAGTAAVTSRKTLANVQEDGAKRYGMIHDETACIGCTACT
CCCCCCHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHH
EACREVNKVPEGVSRLEIIKSEPQGEYPNVDYRFTRNSCQHCDNAPCVMVCPTGAAYKDE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHCCCCCCCEEEECCCCCCCCCC
KTGIVDVHQEKCVGCGYCLLACPYQVRFFHPENKSADKCNFCRDTNLAQGKLPACVESCP
CCCEEEECHHHHCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
TKALTFGDLNDPKSEINQVLQSEVVYRDKAYLGTQPKLYKVPHQKGEI
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]