| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709908
Identifier: 218709908
GI number: 218709908
Start: 2064911
End: 2065972
Strand: Reverse
Name: 218709908
Synonym: VS_1921
Alternate gene names: NA
Gene position: 2065972-2064911 (Counterclockwise)
Preceding gene: 218709909
Following gene: 218709907
Centisome position: 62.62
GC content: 45.67
Gene sequence:
>1062_bases ATGACGCATAAATTTTTGTTAATGCCTTTGTCGGTATTAATCATGGCAGGCTGCCAATCATCGGGTGAGCAAGCTGCTTC ATCTGAGGTTAATGGTGTTTCTTATCAAGCAGATACGACCGATCACATCAGTCGCAGTGTGTATCAACAAGAGTTTGATT CAGCCGTCCTATTCGCCAAGCAAGCCAACGAGCTAGAAGTCTTGATGCAGGGTTACTGCCAAACTAATGATGTTGAGTTA GATGCTTTGAAAAATCAGTGGCAGCTCACCATGAACAGTTGGATGGCACTGCAAGGACAAGAAAGAGGCCCAACAGCGGC ACTTGAAGAGAGCTGGAATATTCAATTTTGGCCAGATAAGAAGAACACCACCGGTCTTAAAATGCGTCAATTGACTCAGC AGGATAAAGCATGGTCTCAAGACGAAATCGCGCAGCAGAGTGTTACCGTTCAAGGGCTAGGCGCGTTGGAATGGTCGCTT TATGACGAGCAATCGCCACTGCTTCAAGACAAAACACTAGGCTGCCAATCATCACAAGCGATTACTGAAAACTTAGCGAT TAAGTCATCTTCGATTGCACAGGCATGGCAGGTTAACCCTTGGTTAGCGTTAGACGAGATTCGTTGGGAGTCTGAATACA TCGCTTTATTGACCAACCAACTTGATTACAGCATGAAAAAGCTGAGTCGCCCAATGGCTAAAATCGGTCATCCGCGTCCT TACTTCTCAGAATCATGGCGTGCACAAACCTCAATGACTCAACTAAAAGCGAATGTAGCAGCACTTCAGAATTTGTACCT TGCCGATGGCAATGGCTTAGACCGCTTGTTGAGAGAGAAGGGCTTAAACGACCTGGCTGATCGTGTTGCTGATCAGTTCA CGCTAACGCTAGATACTTGGCTTACAGACTCTAGTTTGTTCGAGTTGCTGCAGAGCAAAGAGGGCTACCGGAATGTGCTG ACTCAATACAACAAACTAGAACGTTTGAAGTACTTGATTCATGAAGAAGTGGCGATAGAGCTTGGCGTGGTAATAGGATT TAATGCTACCGATGGTGACTGA
Upstream 100 bases:
>100_bases GAACACAACCGCTGAACGTGTAGGAATACGAGTTCAGCGGTCGTTTGGTATTTAATGAACTCATATAATTAAAAGAAAAA TTAGGAAGTAAGGTAACAGC
Downstream 100 bases:
>100_bases TACTACACGAAGAACGCTACTCAAGGCTGCACTGGGTTGTGCAGCTGTACCTGTACTTCCGTTTGGCTGCGCTAGTCGCT CTGGCGCAGCAAGCACATCT
Product: putative periplasmic lipoprotein
Products: NA
Alternate protein names: Periplasmic Lipoprotein; Imelysin Superfamily Protein; Signal Peptide Protein; Periplasmic Lipoprotein-Like Protein; Iron-Regulated Protein A; Imelysin Family
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MTHKFLLMPLSVLIMAGCQSSGEQAASSEVNGVSYQADTTDHISRSVYQQEFDSAVLFAKQANELEVLMQGYCQTNDVEL DALKNQWQLTMNSWMALQGQERGPTAALEESWNIQFWPDKKNTTGLKMRQLTQQDKAWSQDEIAQQSVTVQGLGALEWSL YDEQSPLLQDKTLGCQSSQAITENLAIKSSSIAQAWQVNPWLALDEIRWESEYIALLTNQLDYSMKKLSRPMAKIGHPRP YFSESWRAQTSMTQLKANVAALQNLYLADGNGLDRLLREKGLNDLADRVADQFTLTLDTWLTDSSLFELLQSKEGYRNVL TQYNKLERLKYLIHEEVAIELGVVIGFNATDGD
Sequences:
>Translated_353_residues MTHKFLLMPLSVLIMAGCQSSGEQAASSEVNGVSYQADTTDHISRSVYQQEFDSAVLFAKQANELEVLMQGYCQTNDVEL DALKNQWQLTMNSWMALQGQERGPTAALEESWNIQFWPDKKNTTGLKMRQLTQQDKAWSQDEIAQQSVTVQGLGALEWSL YDEQSPLLQDKTLGCQSSQAITENLAIKSSSIAQAWQVNPWLALDEIRWESEYIALLTNQLDYSMKKLSRPMAKIGHPRP YFSESWRAQTSMTQLKANVAALQNLYLADGNGLDRLLREKGLNDLADRVADQFTLTLDTWLTDSSLFELLQSKEGYRNVL TQYNKLERLKYLIHEEVAIELGVVIGFNATDGD >Mature_352_residues THKFLLMPLSVLIMAGCQSSGEQAASSEVNGVSYQADTTDHISRSVYQQEFDSAVLFAKQANELEVLMQGYCQTNDVELD ALKNQWQLTMNSWMALQGQERGPTAALEESWNIQFWPDKKNTTGLKMRQLTQQDKAWSQDEIAQQSVTVQGLGALEWSLY DEQSPLLQDKTLGCQSSQAITENLAIKSSSIAQAWQVNPWLALDEIRWESEYIALLTNQLDYSMKKLSRPMAKIGHPRPY FSESWRAQTSMTQLKANVAALQNLYLADGNGLDRLLREKGLNDLADRVADQFTLTLDTWLTDSSLFELLQSKEGYRNVLT QYNKLERLKYLIHEEVAIELGVVIGFNATDGD
Specific function: Unknown
COG id: COG3489
COG function: function code R; Predicted periplasmic lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39906; Mature: 39775
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00445 FGGY_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHKFLLMPLSVLIMAGCQSSGEQAASSEVNGVSYQADTTDHISRSVYQQEFDSAVLFAK CCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH QANELEVLMQGYCQTNDVELDALKNQWQLTMNSWMALQGQERGPTAALEESWNIQFWPDK CCHHHHHHHHHCCCCCCEEHHHHHCHHHEEHHHHEEECCCCCCCCHHHHCCCCEEECCCC KNTTGLKMRQLTQQDKAWSQDEIAQQSVTVQGLGALEWSLYDEQSPLLQDKTLGCQSSQA CCCCCHHHHHHHHHHCCCCHHHHHHHHCEEEECCCEEEEECCCCCCCCHHHCCCCCCCHH ITENLAIKSSSIAQAWQVNPWLALDEIRWESEYIALLTNQLDYSMKKLSRPMAKIGHPRP HHHHHHCCCCHHHHHHCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCCC YFSESWRAQTSMTQLKANVAALQNLYLADGNGLDRLLREKGLNDLADRVADQFTLTLDTW CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHCCCHHHHHHHHHHEEEEEHHH LTDSSLFELLQSKEGYRNVLTQYNKLERLKYLIHEEVAIELGVVIGFNATDGD CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCC >Mature Secondary Structure THKFLLMPLSVLIMAGCQSSGEQAASSEVNGVSYQADTTDHISRSVYQQEFDSAVLFAK CCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH QANELEVLMQGYCQTNDVELDALKNQWQLTMNSWMALQGQERGPTAALEESWNIQFWPDK CCHHHHHHHHHCCCCCCEEHHHHHCHHHEEHHHHEEECCCCCCCCHHHHCCCCEEECCCC KNTTGLKMRQLTQQDKAWSQDEIAQQSVTVQGLGALEWSLYDEQSPLLQDKTLGCQSSQA CCCCCHHHHHHHHHHCCCCHHHHHHHHCEEEECCCEEEEECCCCCCCCHHHCCCCCCCHH ITENLAIKSSSIAQAWQVNPWLALDEIRWESEYIALLTNQLDYSMKKLSRPMAKIGHPRP HHHHHHCCCCHHHHHHCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCCC YFSESWRAQTSMTQLKANVAALQNLYLADGNGLDRLLREKGLNDLADRVADQFTLTLDTW CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHCCCHHHHHHHHHHEEEEEHHH LTDSSLFELLQSKEGYRNVLTQYNKLERLKYLIHEEVAIELGVVIGFNATDGD CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA