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The map label for this gene is ycfQ [C]

Identifier: 218709828

GI number: 218709828

Start: 1984276

End: 1984914

Strand: Reverse

Name: ycfQ [C]

Synonym: VS_1841

Alternate gene names: 218709828

Gene position: 1984914-1984276 (Counterclockwise)

Preceding gene: 218709829

Following gene: 218709827

Centisome position: 60.16

GC content: 42.1

Gene sequence:

>639_bases
GTGATTGAAATGGCACCAAGAAGTACAACCAAAGACAAAATCTTAGATGTGGCTGAAGGCTTATTTGCTGAGCACGGTTT
TAATGACACCTCTTTACGCACGATTACGAGTAAAGCCAATGTCAATCTTGCTTCAGTGAACTACCACTTTGGCGATAAGA
AGACTCTGGTTCGTGCGGTACTCAATCGTTACTTAGAAGCATTTATGCCAGCATTGCAAGATGCACTAGTGAACTTAAAT
TTGAACGAAACGTATTCTATGAGTGACGTGTTTGAGTCTTTAAGGCAGCCACTAAGGGCACTCAATGATGTAAGGCCAAA
TGGTACGAGTCGATTTATGTTACTCATCGGTCGAGGCTATACAGATGTGCAAGGTCATTTGCGTTGGTTCATTACTACTC
GTTATAGCGAAGTACTGACTTTGTTTACCAACTCAGTAATGAAAGCCAACCCAAACCTCACTCAAGAACAGTTATTTTGG
CGATTGCACTTCACCCTTGGGACTTGTGTTTTCACCATGGCGTCTAGCCAAGCTCTAATAGAAATTGCAGAGAATGACTA
CGACACAAAGATAGATGCTAAGGCAGTGGTCGATATTCTCATTCCATTTTTGGCCGCTGGCATGTCAGCAAAAGAATAA

Upstream 100 bases:

>100_bases
TAATGCTTACAACTGGTACGACCAATTTGTGAAAATGTGATGTTGCTTGCTTGTTAAATAAATGTTCTAAGCGTATATTT
CAAACAGTTGTTTAATACGA

Downstream 100 bases:

>100_bases
AACAATAAAAAGCAAAATATTCACAAACAATATAGTGAACAAAAGGATCTGAACTATGAGCTCTCTAAGACAAAAATGGG
TAAGTGACCCAGCTTTTAAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator PsrA; TetR Family Regulatory Protein; Transcriptional Regulator TetR Family Protein; Regulatory Protein Tetr; Transcription Regulator Protein; PsrA Protein; TetR Family Transcription Factor; TRANSCRIPTIONal REGULATOR TetR Family; Transcriptional Regulator Transcription Regulator Protein; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MIEMAPRSTTKDKILDVAEGLFAEHGFNDTSLRTITSKANVNLASVNYHFGDKKTLVRAVLNRYLEAFMPALQDALVNLN
LNETYSMSDVFESLRQPLRALNDVRPNGTSRFMLLIGRGYTDVQGHLRWFITTRYSEVLTLFTNSVMKANPNLTQEQLFW
RLHFTLGTCVFTMASSQALIEIAENDYDTKIDAKAVVDILIPFLAAGMSAKE

Sequences:

>Translated_212_residues
MIEMAPRSTTKDKILDVAEGLFAEHGFNDTSLRTITSKANVNLASVNYHFGDKKTLVRAVLNRYLEAFMPALQDALVNLN
LNETYSMSDVFESLRQPLRALNDVRPNGTSRFMLLIGRGYTDVQGHLRWFITTRYSEVLTLFTNSVMKANPNLTQEQLFW
RLHFTLGTCVFTMASSQALIEIAENDYDTKIDAKAVVDILIPFLAAGMSAKE
>Mature_212_residues
MIEMAPRSTTKDKILDVAEGLFAEHGFNDTSLRTITSKANVNLASVNYHFGDKKTLVRAVLNRYLEAFMPALQDALVNLN
LNETYSMSDVFESLRQPLRALNDVRPNGTSRFMLLIGRGYTDVQGHLRWFITTRYSEVLTLFTNSVMKANPNLTQEQLFW
RLHFTLGTCVFTMASSQALIEIAENDYDTKIDAKAVVDILIPFLAAGMSAKE

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23893; Mature: 23893

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEMAPRSTTKDKILDVAEGLFAEHGFNDTSLRTITSKANVNLASVNYHFGDKKTLVRAV
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHEEEECCCCEEEEEEEEECCCHHHHHHHH
LNRYLEAFMPALQDALVNLNLNETYSMSDVFESLRQPLRALNDVRPNGTSRFMLLIGRGY
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
TDVQGHLRWFITTRYSEVLTLFTNSVMKANPNLTQEQLFWRLHFTLGTCVFTMASSQALI
CCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHE
EIAENDYDTKIDAKAVVDILIPFLAAGMSAKE
EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIEMAPRSTTKDKILDVAEGLFAEHGFNDTSLRTITSKANVNLASVNYHFGDKKTLVRAV
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHEEEECCCCEEEEEEEEECCCHHHHHHHH
LNRYLEAFMPALQDALVNLNLNETYSMSDVFESLRQPLRALNDVRPNGTSRFMLLIGRGY
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
TDVQGHLRWFITTRYSEVLTLFTNSVMKANPNLTQEQLFWRLHFTLGTCVFTMASSQALI
CCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHE
EIAENDYDTKIDAKAVVDILIPFLAAGMSAKE
EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA