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The map label for this gene is rpfG [H]

Identifier: 218709804

GI number: 218709804

Start: 1949371

End: 1950912

Strand: Direct

Name: rpfG [H]

Synonym: VS_1816

Alternate gene names: 218709804

Gene position: 1949371-1950912 (Clockwise)

Preceding gene: 218709803

Following gene: 218709807

Centisome position: 59.08

GC content: 44.81

Gene sequence:

>1542_bases
TTGCGAGACCTTAAGATGAAAATGAACAAAGGCTTATCGATGGATACTTCAAATTACAATCAATCGCTAACGACTCAATT
ATACGTCATCGCTGGCGTGCTATTTGGCACCTACGGCAGTCGGGTATGCCCGATGCTCGAAAGCTTAACGACGTTAGAAA
TTTTCACCCAAGTCAGTAGTGTCTTTATCTTATTGTGGCTAGCGCGTCATTATTTGCTATCGCAACACACCTTAGTCAAA
CAAGGTCGATTTGCACAACTCGATACTATGTTGTTCTTTGCCGCGAGTATTCCTTTCGCGCTCTACTACAACCTAAGCTA
CGACTTCACGATAGACAGTAACTTGAAAGTGCTGTTCGGCATGAGCCTATTTGGTTTCTTTACCGGTACCATTCTTCAAC
TGAAAGCGAAGCTTAGCCAAATAGATGAAATGGAGATGACTGGGCAATTTGACTTCCACCTGATAGGTGAAAGAAGTTCA
CTGGTTAAACAAATGATTGGTTTGGTCATCGTGCTTCTGGTAACACTGACCACCATGCTGACTATGGTGGCCGTCAAAGA
CATCTTCTGGCTAGAACACAACCCCGGCCGTTTGCTAGATGGTACGGGCAAGATCAGCGTGATCAAAGAGTTCATTTATT
TGGCGGTTGTACTAGGTGGATACGCGATAACCATCATGACTCTATGGAGCCAGCTGATTAGACGTATTCTTCTAAGCCAA
GAGCACGCATTAAGTAAAGTAACTAATGGTGAGCCAGGCGTTCGCTTACCTGTATTTAGCTACAACGAGCTTGGGTCAAT
AGCATCTATGACCAATACCATGCTTGATAGCCTCGAAAACGCTCAAGACGAAGTAAAAACCACACGTGACGTCGCGATTG
TTAGCTTATCTGCACTAGCTGAATCTCGAGACAATGAAACTGGCGCCCATATTTTACGAACTCAAGAATACGTAAAAGTA
CTCGCACTGGAGCTCAGCAAATCTGAAGCTCACGCGACCTTATTAACACCCAACTATATCGAGCTGCTTTATAAATCTGC
CCCACTGCATGATGTAGGTAAGGTTGGAGTACCTGACAGTGTGCTGCTAAAACCGGGCAAACTGACGGATGAAGAGTTTG
AGATAATGAAAGGTCACCCTGCTATTGGCGCCGAAGCGTTATCTATTGCAGAAAAGCAATTGGGAAGCAGTTCTTTCTTA
AGAGTCGCGAAAGAGATTTCTCTCACTCACCACGAGAAATGGAATGGCAGCGGTTATCCAAATCAGTTGTCTGGTGAAGA
GATCCCATTATCCGGTCGCTTAATGGCATTGGCCGATGTTTATGACGCATTAATATCGAAGCGAGTCTACAAGCCAGCCT
TTACTCATGAGCAAGCGAAACAGATTATCTTGGAGGGCAATGGGACCCATTTTGACCCGCAAGTTGTCCAAGCTTTTCTG
GCCGTCGAACAAGAGTTCGTTTCAATTGCCGCGACCTACAAGGATGGAAAAAACATGCAAAGTGAACTTGAACGAGAAAG
CTTTGTTGCTCAACCTGCTTAG

Upstream 100 bases:

>100_bases
TAGAATCCCCGACCTTATTCACACTCGCTATACTAGCCACACATACCTACCAACCTCGTGAATTAATACACAAAATACGT
ATTCGTAAACTTAGGAATAG

Downstream 100 bases:

>100_bases
TCTTTTCGAAAACCACTAACTATACAGGCTCCGACTATACAGGTTACAGTAAGTTATGGGGTGTTATACAGGCTACAATA
GTTATATAGGTTAGGCCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MRDLKMKMNKGLSMDTSNYNQSLTTQLYVIAGVLFGTYGSRVCPMLESLTTLEIFTQVSSVFILLWLARHYLLSQHTLVK
QGRFAQLDTMLFFAASIPFALYYNLSYDFTIDSNLKVLFGMSLFGFFTGTILQLKAKLSQIDEMEMTGQFDFHLIGERSS
LVKQMIGLVIVLLVTLTTMLTMVAVKDIFWLEHNPGRLLDGTGKISVIKEFIYLAVVLGGYAITIMTLWSQLIRRILLSQ
EHALSKVTNGEPGVRLPVFSYNELGSIASMTNTMLDSLENAQDEVKTTRDVAIVSLSALAESRDNETGAHILRTQEYVKV
LALELSKSEAHATLLTPNYIELLYKSAPLHDVGKVGVPDSVLLKPGKLTDEEFEIMKGHPAIGAEALSIAEKQLGSSSFL
RVAKEISLTHHEKWNGSGYPNQLSGEEIPLSGRLMALADVYDALISKRVYKPAFTHEQAKQIILEGNGTHFDPQVVQAFL
AVEQEFVSIAATYKDGKNMQSELERESFVAQPA

Sequences:

>Translated_513_residues
MRDLKMKMNKGLSMDTSNYNQSLTTQLYVIAGVLFGTYGSRVCPMLESLTTLEIFTQVSSVFILLWLARHYLLSQHTLVK
QGRFAQLDTMLFFAASIPFALYYNLSYDFTIDSNLKVLFGMSLFGFFTGTILQLKAKLSQIDEMEMTGQFDFHLIGERSS
LVKQMIGLVIVLLVTLTTMLTMVAVKDIFWLEHNPGRLLDGTGKISVIKEFIYLAVVLGGYAITIMTLWSQLIRRILLSQ
EHALSKVTNGEPGVRLPVFSYNELGSIASMTNTMLDSLENAQDEVKTTRDVAIVSLSALAESRDNETGAHILRTQEYVKV
LALELSKSEAHATLLTPNYIELLYKSAPLHDVGKVGVPDSVLLKPGKLTDEEFEIMKGHPAIGAEALSIAEKQLGSSSFL
RVAKEISLTHHEKWNGSGYPNQLSGEEIPLSGRLMALADVYDALISKRVYKPAFTHEQAKQIILEGNGTHFDPQVVQAFL
AVEQEFVSIAATYKDGKNMQSELERESFVAQPA
>Mature_513_residues
MRDLKMKMNKGLSMDTSNYNQSLTTQLYVIAGVLFGTYGSRVCPMLESLTTLEIFTQVSSVFILLWLARHYLLSQHTLVK
QGRFAQLDTMLFFAASIPFALYYNLSYDFTIDSNLKVLFGMSLFGFFTGTILQLKAKLSQIDEMEMTGQFDFHLIGERSS
LVKQMIGLVIVLLVTLTTMLTMVAVKDIFWLEHNPGRLLDGTGKISVIKEFIYLAVVLGGYAITIMTLWSQLIRRILLSQ
EHALSKVTNGEPGVRLPVFSYNELGSIASMTNTMLDSLENAQDEVKTTRDVAIVSLSALAESRDNETGAHILRTQEYVKV
LALELSKSEAHATLLTPNYIELLYKSAPLHDVGKVGVPDSVLLKPGKLTDEEFEIMKGHPAIGAEALSIAEKQLGSSSFL
RVAKEISLTHHEKWNGSGYPNQLSGEEIPLSGRLMALADVYDALISKRVYKPAFTHEQAKQIILEGNGTHFDPQVVQAFL
AVEQEFVSIAATYKDGKNMQSELERESFVAQPA

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 57045; Mature: 57045

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS50885 HAMP ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLKMKMNKGLSMDTSNYNQSLTTQLYVIAGVLFGTYGSRVCPMLESLTTLEIFTQVSS
CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
VFILLWLARHYLLSQHTLVKQGRFAQLDTMLFFAASIPFALYYNLSYDFTIDSNLKVLFG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECEEEEEECCCCHHHHH
MSLFGFFTGTILQLKAKLSQIDEMEMTGQFDFHLIGERSSLVKQMIGLVIVLLVTLTTML
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
TMVAVKDIFWLEHNPGRLLDGTGKISVIKEFIYLAVVLGGYAITIMTLWSQLIRRILLSQ
HHHHHHHHHEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHALSKVTNGEPGVRLPVFSYNELGSIASMTNTMLDSLENAQDEVKTTRDVAIVSLSALA
HHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESRDNETGAHILRTQEYVKVLALELSKSEAHATLLTPNYIELLYKSAPLHDVGKVGVPDS
HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
VLLKPGKLTDEEFEIMKGHPAIGAEALSIAEKQLGSSSFLRVAKEISLTHHEKWNGSGYP
CEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCC
NQLSGEEIPLSGRLMALADVYDALISKRVYKPAFTHEQAKQIILEGNGTHFDPQVVQAFL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCCCCCHHHHHHHH
AVEQEFVSIAATYKDGKNMQSELERESFVAQPA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRDLKMKMNKGLSMDTSNYNQSLTTQLYVIAGVLFGTYGSRVCPMLESLTTLEIFTQVSS
CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
VFILLWLARHYLLSQHTLVKQGRFAQLDTMLFFAASIPFALYYNLSYDFTIDSNLKVLFG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECEEEEEECCCCHHHHH
MSLFGFFTGTILQLKAKLSQIDEMEMTGQFDFHLIGERSSLVKQMIGLVIVLLVTLTTML
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
TMVAVKDIFWLEHNPGRLLDGTGKISVIKEFIYLAVVLGGYAITIMTLWSQLIRRILLSQ
HHHHHHHHHEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHALSKVTNGEPGVRLPVFSYNELGSIASMTNTMLDSLENAQDEVKTTRDVAIVSLSALA
HHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESRDNETGAHILRTQEYVKVLALELSKSEAHATLLTPNYIELLYKSAPLHDVGKVGVPDS
HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
VLLKPGKLTDEEFEIMKGHPAIGAEALSIAEKQLGSSSFLRVAKEISLTHHEKWNGSGYP
CEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCC
NQLSGEEIPLSGRLMALADVYDALISKRVYKPAFTHEQAKQIILEGNGTHFDPQVVQAFL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCCCCCHHHHHHHH
AVEQEFVSIAATYKDGKNMQSELERESFVAQPA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]