| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709766
Identifier: 218709766
GI number: 218709766
Start: 1904039
End: 1906084
Strand: Direct
Name: 218709766
Synonym: VS_1778
Alternate gene names: NA
Gene position: 1904039-1906084 (Clockwise)
Preceding gene: 218709765
Following gene: 218709767
Centisome position: 57.71
GC content: 47.02
Gene sequence:
>2046_bases TTGAAACCCTCTACGACATCATCTCTTCCCCTGTTACTCGCCGGACCCATTTTAAGAAAAACGACTGCAACTGAAGTCGT ACTTTGGTTAGCCACCAGCTCGCCTCTGACAGGCAGAGCCGAACTTCATACTCAAGAAATAGACGATTCTGAAGCAGCAC AAGACCAACCGTTTTATACCTCATCGCTTGAAGATCATGATTCGATTCAAATCGGTACACATGCGTGGGTAACGCTCATC CGCTTACAAGGCGAGTTCCCGACGAATACACCTCTAGAGTATGACGTTCACACAGAGTCAGGCTCATTAAAAGAGCTTGC CCCTCACCTTGTTTACAACGGTAAATCTCGCGTTGAGTTTAAGATATCGACCTCGGCTGATTACATTCTTCATGGCTCTT GCCGTAATCCACATCATCCAAGCAAAGACAGCCTAGTCGCAGCAGATAACAAGATTGCCGATCAAACCGTCGCTGAAAGA CCCGATATGCTGATGATGAGCGGCGATCAGATCTACGCTGACCATGTGGCAGGCCCAACACTTGATGCTATTCAGCAAGT GATTCAATTGCTTGGCCTAGTGGGAGAGAGCTTACCGACTGACTCGCAAGTTAACCGAATCAACAGCAGTGACGCCTTAT TTGAGAGCGAATATCACTTATATCAACGTGATAAGTACTTGCCACACCACACCACTTCAGAATCCATGCTCGATAAGTTC TTCCCGAATCGTGGCGTACCGATTTTTAGCTCTACCGATTGTGAAAACCACTTGGTCACGCTGTCTGAGTTTATCGCGAT GTACCTGTTAGTTTGGTCGCCGACACTGTGGCAGTGTGTCAATCGAGAGCGCTTAATTGAGAATAACTTCACTCAAGGTG GACGCCAATTAACACCGACTGAGCAGCAACAGTGGCGTGATGAAAGCGTCATCATGGATGATTTCATTGCTGGCTTACCG CAAGTACAACGTCTGTTCGCACATATCCCTACGTACATGATCTTTGATGATCACGATGTGACCGATGATTGGAACCTTAC CGTGGGTTGGGAACATGCCGTAGACCAAAACCAGTTCGCAACTCAAGTCATTGGTAACGGCCTTGCGGCCTACTGGATGT GTCAGGGCTGGGGTAATAAACCGGAGAGCTTCGACGAGACATTCATCGAGCAAGCAAAACAGCTTTTTATCGATCAACAG CGCGTTCTTAAACAAACGCATGACGTTGAACAAACGGACAACCTTAAACAAACGAACAGTGAAACCGGCGATGCCGCGAC TACTCACTCTGTTAGCGACATCGAGCCGAACAAGCATCGAGCCTTCATTGAAATGCTGAGTCGCTTTGAGGAGTGGCATT ACACAATAGATACTTCACCCAAAGTCATTGTGTTGGATACCCGAACCCGTCGCTGGCGTTCGGAATCTCGTATGAATAAA CCTTCAGGTTTGATGGACTGGGAGGCCTTGATTGAATTTCAACATCAATTGATGCATCAAGATAAAGTCGTGATTGTTTC TGCTGCGCCAATGTTCGGCGTTAAGTTCATTGAAACACTACAAAAAATGGCGACAACAATTGGTAAGCCATTGGTGATTG ACGCTGAAAACTGGATGGCACATCCGGGCAGTGCCAATACGCTGATCAGTATCTTTACCCATACCAAAACACCGACCAAT TTCGTGGTGCTTTCGGGCGATGTTCACTACTCCTTTGCTTACGATATCAAGCTTAGATACCGCCGAAATAGCCCGAACAT TTATCAAATCACCTGTAGTGGCATTAAAAATCAATTCCCAGCGCCGCTGCTTAAATTCTGTGATGTGTGGGACCGCCTGT TATACAGCCCTCGCTCAGTTTTGAACTATTTCACCAAGCGAAAGCGCTTAAAGATCGAGAAGCGAAGCCCAGACAATCAA ACCTTCTATCGCCTTTCAAACCGAAGTGCGATTGGTGAATTAAGGCTAGATGTGGATGGTAAACCTCAGTCGATCACGAC ACTCAGTGGCGATGGTAAAATGACCCGCTTCCCAGAGCCCGATTGA
Upstream 100 bases:
>100_bases GTCTGAAATGATCGCGCCTGACATAACAGAGCCTGAAACGAACAAGCTCGAAACAAAACAACACCACGACGACTAGCCAC CAACGATTTTAGGTACCGTA
Downstream 100 bases:
>100_bases TAAAATGCTCCTTATCGCTCGCCTAACCGTAATGTCAGTTTTAAGTAAAGACGCTTGCGATCACACTCCGTAGGCCCAAT AGTAATAATATTCACCATAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 681; Mature: 681
Protein sequence:
>681_residues MKPSTTSSLPLLLAGPILRKTTATEVVLWLATSSPLTGRAELHTQEIDDSEAAQDQPFYTSSLEDHDSIQIGTHAWVTLI RLQGEFPTNTPLEYDVHTESGSLKELAPHLVYNGKSRVEFKISTSADYILHGSCRNPHHPSKDSLVAADNKIADQTVAER PDMLMMSGDQIYADHVAGPTLDAIQQVIQLLGLVGESLPTDSQVNRINSSDALFESEYHLYQRDKYLPHHTTSESMLDKF FPNRGVPIFSSTDCENHLVTLSEFIAMYLLVWSPTLWQCVNRERLIENNFTQGGRQLTPTEQQQWRDESVIMDDFIAGLP QVQRLFAHIPTYMIFDDHDVTDDWNLTVGWEHAVDQNQFATQVIGNGLAAYWMCQGWGNKPESFDETFIEQAKQLFIDQQ RVLKQTHDVEQTDNLKQTNSETGDAATTHSVSDIEPNKHRAFIEMLSRFEEWHYTIDTSPKVIVLDTRTRRWRSESRMNK PSGLMDWEALIEFQHQLMHQDKVVIVSAAPMFGVKFIETLQKMATTIGKPLVIDAENWMAHPGSANTLISIFTHTKTPTN FVVLSGDVHYSFAYDIKLRYRRNSPNIYQITCSGIKNQFPAPLLKFCDVWDRLLYSPRSVLNYFTKRKRLKIEKRSPDNQ TFYRLSNRSAIGELRLDVDGKPQSITTLSGDGKMTRFPEPD
Sequences:
>Translated_681_residues MKPSTTSSLPLLLAGPILRKTTATEVVLWLATSSPLTGRAELHTQEIDDSEAAQDQPFYTSSLEDHDSIQIGTHAWVTLI RLQGEFPTNTPLEYDVHTESGSLKELAPHLVYNGKSRVEFKISTSADYILHGSCRNPHHPSKDSLVAADNKIADQTVAER PDMLMMSGDQIYADHVAGPTLDAIQQVIQLLGLVGESLPTDSQVNRINSSDALFESEYHLYQRDKYLPHHTTSESMLDKF FPNRGVPIFSSTDCENHLVTLSEFIAMYLLVWSPTLWQCVNRERLIENNFTQGGRQLTPTEQQQWRDESVIMDDFIAGLP QVQRLFAHIPTYMIFDDHDVTDDWNLTVGWEHAVDQNQFATQVIGNGLAAYWMCQGWGNKPESFDETFIEQAKQLFIDQQ RVLKQTHDVEQTDNLKQTNSETGDAATTHSVSDIEPNKHRAFIEMLSRFEEWHYTIDTSPKVIVLDTRTRRWRSESRMNK PSGLMDWEALIEFQHQLMHQDKVVIVSAAPMFGVKFIETLQKMATTIGKPLVIDAENWMAHPGSANTLISIFTHTKTPTN FVVLSGDVHYSFAYDIKLRYRRNSPNIYQITCSGIKNQFPAPLLKFCDVWDRLLYSPRSVLNYFTKRKRLKIEKRSPDNQ TFYRLSNRSAIGELRLDVDGKPQSITTLSGDGKMTRFPEPD >Mature_681_residues MKPSTTSSLPLLLAGPILRKTTATEVVLWLATSSPLTGRAELHTQEIDDSEAAQDQPFYTSSLEDHDSIQIGTHAWVTLI RLQGEFPTNTPLEYDVHTESGSLKELAPHLVYNGKSRVEFKISTSADYILHGSCRNPHHPSKDSLVAADNKIADQTVAER PDMLMMSGDQIYADHVAGPTLDAIQQVIQLLGLVGESLPTDSQVNRINSSDALFESEYHLYQRDKYLPHHTTSESMLDKF FPNRGVPIFSSTDCENHLVTLSEFIAMYLLVWSPTLWQCVNRERLIENNFTQGGRQLTPTEQQQWRDESVIMDDFIAGLP QVQRLFAHIPTYMIFDDHDVTDDWNLTVGWEHAVDQNQFATQVIGNGLAAYWMCQGWGNKPESFDETFIEQAKQLFIDQQ RVLKQTHDVEQTDNLKQTNSETGDAATTHSVSDIEPNKHRAFIEMLSRFEEWHYTIDTSPKVIVLDTRTRRWRSESRMNK PSGLMDWEALIEFQHQLMHQDKVVIVSAAPMFGVKFIETLQKMATTIGKPLVIDAENWMAHPGSANTLISIFTHTKTPTN FVVLSGDVHYSFAYDIKLRYRRNSPNIYQITCSGIKNQFPAPLLKFCDVWDRLLYSPRSVLNYFTKRKRLKIEKRSPDNQ TFYRLSNRSAIGELRLDVDGKPQSITTLSGDGKMTRFPEPD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77630; Mature: 77630
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPSTTSSLPLLLAGPILRKTTATEVVLWLATSSPLTGRAELHTQEIDDSEAAQDQPFYT CCCCCCCCCCHHHCCCHHHHCCCCEEEEEEECCCCCCCCHHHHHHHCCCCHHCCCCCCEE SSLEDHDSIQIGTHAWVTLIRLQGEFPTNTPLEYDVHTESGSLKELAPHLVYNGKSRVEF CCCCCCCCEEECCHHEEEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHEECCCCEEEE KISTSADYILHGSCRNPHHPSKDSLVAADNKIADQTVAERPDMLMMSGDQIYADHVAGPT EEECCCCEEEECCCCCCCCCCCCCEEECCCCHHHHHHHCCCCEEEEECCEEEECCCCCCC LDAIQQVIQLLGLVGESLPTDSQVNRINSSDALFESEYHLYQRDKYLPHHTTSESMLDKF HHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH FPNRGVPIFSSTDCENHLVTLSEFIAMYLLVWSPTLWQCVNRERLIENNFTQGGRQLTPT CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHCCCCCCCCCCCCC EQQQWRDESVIMDDFIAGLPQVQRLFAHIPTYMIFDDHDVTDDWNLTVGWEHAVDQNQFA HHHHHCCCHHHHHHHHCCCHHHHHHHHHCCEEEEECCCCCCCCCEEEECHHHCCCCHHHH TQVIGNGLAAYWMCQGWGNKPESFDETFIEQAKQLFIDQQRVLKQTHDVEQTDNLKQTNS HHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHCCC ETGDAATTHSVSDIEPNKHRAFIEMLSRFEEWHYTIDTSPKVIVLDTRTRRWRSESRMNK CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEECCCCEEEEECCCCHHHHHHHHCCC PSGLMDWEALIEFQHQLMHQDKVVIVSAAPMFGVKFIETLQKMATTIGKPLVIDAENWMA CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECHHHCC HPGSANTLISIFTHTKTPTNFVVLSGDVHYSFAYDIKLRYRRNSPNIYQITCSGIKNQFP CCCCCCCEEEEEECCCCCCEEEEEECCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCC APLLKFCDVWDRLLYSPRSVLNYFTKRKRLKIEKRSPDNQTFYRLSNRSAIGELRLDVDG HHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCCCCEEEEECCCCCEEEEEEECCC KPQSITTLSGDGKMTRFPEPD CCCEEEEECCCCCCCCCCCCC >Mature Secondary Structure MKPSTTSSLPLLLAGPILRKTTATEVVLWLATSSPLTGRAELHTQEIDDSEAAQDQPFYT CCCCCCCCCCHHHCCCHHHHCCCCEEEEEEECCCCCCCCHHHHHHHCCCCHHCCCCCCEE SSLEDHDSIQIGTHAWVTLIRLQGEFPTNTPLEYDVHTESGSLKELAPHLVYNGKSRVEF CCCCCCCCEEECCHHEEEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHEECCCCEEEE KISTSADYILHGSCRNPHHPSKDSLVAADNKIADQTVAERPDMLMMSGDQIYADHVAGPT EEECCCCEEEECCCCCCCCCCCCCEEECCCCHHHHHHHCCCCEEEEECCEEEECCCCCCC LDAIQQVIQLLGLVGESLPTDSQVNRINSSDALFESEYHLYQRDKYLPHHTTSESMLDKF HHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH FPNRGVPIFSSTDCENHLVTLSEFIAMYLLVWSPTLWQCVNRERLIENNFTQGGRQLTPT CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHCCCCCCCCCCCCC EQQQWRDESVIMDDFIAGLPQVQRLFAHIPTYMIFDDHDVTDDWNLTVGWEHAVDQNQFA HHHHHCCCHHHHHHHHCCCHHHHHHHHHCCEEEEECCCCCCCCCEEEECHHHCCCCHHHH TQVIGNGLAAYWMCQGWGNKPESFDETFIEQAKQLFIDQQRVLKQTHDVEQTDNLKQTNS HHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHCCC ETGDAATTHSVSDIEPNKHRAFIEMLSRFEEWHYTIDTSPKVIVLDTRTRRWRSESRMNK CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEECCCCEEEEECCCCHHHHHHHHCCC PSGLMDWEALIEFQHQLMHQDKVVIVSAAPMFGVKFIETLQKMATTIGKPLVIDAENWMA CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECHHHCC HPGSANTLISIFTHTKTPTNFVVLSGDVHYSFAYDIKLRYRRNSPNIYQITCSGIKNQFP CCCCCCCEEEEEECCCCCCEEEEEECCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCC APLLKFCDVWDRLLYSPRSVLNYFTKRKRLKIEKRSPDNQTFYRLSNRSAIGELRLDVDG HHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCCCCEEEEECCCCCEEEEEEECCC KPQSITTLSGDGKMTRFPEPD CCCEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA