| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709760
Identifier: 218709760
GI number: 218709760
Start: 1895396
End: 1896169
Strand: Direct
Name: 218709760
Synonym: VS_1772
Alternate gene names: NA
Gene position: 1895396-1896169 (Clockwise)
Preceding gene: 218709752
Following gene: 218709761
Centisome position: 57.45
GC content: 45.35
Gene sequence:
>774_bases TTGAGCGCCAAATATTCTTATTTAGCTTGGCAAGTGAATACTTCTAGCCCAGCAGAAAAGCTTGTTTTATTGATGCTTGC AGACGGTGCTGACGAATTCGGCTACACCAATGTGTGCTTAAAAACAGCAGGTCAACTTTGTGCTCTCTCTACGTTTGGTT TAGCCGACTGCCTTAAGTGTTTAGTCGACCAAGGTTTTCTCGATAAGATAAAAGTAGATTATCGAGATCAAAAAGAGATT CACGTTTTCAAAATGCTCATTGAGCAAGAGCAAGCTACGGCGCACGTTGAGGTTCAACCGACCAACAGTATTCCTGTCTA CTCTACGGCACCTGCACCTGCACCTGCACCCAAGTTTCAGCCTGCTCCGGCACCGATGCAACACATGCAGCATGCCCCTC GCCCACAAGGCCGAGGCTCAATGAACAGCAACACCGTATCTACTCATGATCTCAACGAAGAAGAGATACCATCATGGGCA GAACGTGCGTTTAAATTCTCCGGTTTGACCGGTGACCATAGTTTAGTATGGAAGAAATTTGTCCTCTGGTATAAAGCCAA AGCCAATGAATTAATGCCACTATCTCGGATTGAATCCAAGCTGCAGTACTGGCTAGTTAACGAGAAGCAAAATGAAAGAC AACAACAGCAGAAGACCTCTCAATATTCAGGAAATGCAGGACAAGCTCAAGGAAATGGGTATCGACAAAAGCTTAGCCCA TCTGAACGCTTCAGGCAGCAGCTCATTCAAAAAGGCAAAAAGCCAACCTTCTGA
Upstream 100 bases:
>100_bases TATTTGGCTTACTAATGCCGTTTTCTACTAAGTTGCTATAAATTAGGTAAGGGGTGACTTACAATAGTGACAACGACTTA CCTTTTTTGAGAACACGATA
Downstream 100 bases:
>100_bases GCCCGCTTCACCTGTTGTTCCTGACTCTACAGGCTCAGTAGTACCTGAAGTTATTGAAGCACAGAGCACTGAAGTAGCGA CACCCAATGCTGCCAGCACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MSAKYSYLAWQVNTSSPAEKLVLLMLADGADEFGYTNVCLKTAGQLCALSTFGLADCLKCLVDQGFLDKIKVDYRDQKEI HVFKMLIEQEQATAHVEVQPTNSIPVYSTAPAPAPAPKFQPAPAPMQHMQHAPRPQGRGSMNSNTVSTHDLNEEEIPSWA ERAFKFSGLTGDHSLVWKKFVLWYKAKANELMPLSRIESKLQYWLVNEKQNERQQQQKTSQYSGNAGQAQGNGYRQKLSP SERFRQQLIQKGKKPTF
Sequences:
>Translated_257_residues MSAKYSYLAWQVNTSSPAEKLVLLMLADGADEFGYTNVCLKTAGQLCALSTFGLADCLKCLVDQGFLDKIKVDYRDQKEI HVFKMLIEQEQATAHVEVQPTNSIPVYSTAPAPAPAPKFQPAPAPMQHMQHAPRPQGRGSMNSNTVSTHDLNEEEIPSWA ERAFKFSGLTGDHSLVWKKFVLWYKAKANELMPLSRIESKLQYWLVNEKQNERQQQQKTSQYSGNAGQAQGNGYRQKLSP SERFRQQLIQKGKKPTF >Mature_256_residues SAKYSYLAWQVNTSSPAEKLVLLMLADGADEFGYTNVCLKTAGQLCALSTFGLADCLKCLVDQGFLDKIKVDYRDQKEIH VFKMLIEQEQATAHVEVQPTNSIPVYSTAPAPAPAPKFQPAPAPMQHMQHAPRPQGRGSMNSNTVSTHDLNEEEIPSWAE RAFKFSGLTGDHSLVWKKFVLWYKAKANELMPLSRIESKLQYWLVNEKQNERQQQQKTSQYSGNAGQAQGNGYRQKLSPS ERFRQQLIQKGKKPTF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28982; Mature: 28851
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAKYSYLAWQVNTSSPAEKLVLLMLADGADEFGYTNVCLKTAGQLCALSTFGLADCLKC CCCCCEEEEEEECCCCCHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH LVDQGFLDKIKVDYRDQKEIHVFKMLIEQEQATAHVEVQPTNSIPVYSTAPAPAPAPKFQ HHCCCCHHHEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCEECCCCCCCCCCCC PAPAPMQHMQHAPRPQGRGSMNSNTVSTHDLNEEEIPSWAERAFKFSGLTGDHSLVWKKF CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCHHHHHHHH VLWYKAKANELMPLSRIESKLQYWLVNEKQNERQQQQKTSQYSGNAGQAQGNGYRQKLSP HHHHHCCCCCCCCHHHHHHHHHEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCH SERFRQQLIQKGKKPTF HHHHHHHHHHCCCCCCC >Mature Secondary Structure SAKYSYLAWQVNTSSPAEKLVLLMLADGADEFGYTNVCLKTAGQLCALSTFGLADCLKC CCCCEEEEEEECCCCCHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH LVDQGFLDKIKVDYRDQKEIHVFKMLIEQEQATAHVEVQPTNSIPVYSTAPAPAPAPKFQ HHCCCCHHHEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCEECCCCCCCCCCCC PAPAPMQHMQHAPRPQGRGSMNSNTVSTHDLNEEEIPSWAERAFKFSGLTGDHSLVWKKF CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCHHHHHHHH VLWYKAKANELMPLSRIESKLQYWLVNEKQNERQQQQKTSQYSGNAGQAQGNGYRQKLSP HHHHHCCCCCCCCHHHHHHHHHEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCH SERFRQQLIQKGKKPTF HHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA