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The map label for this gene is hcpA [H]

Identifier: 218709744

GI number: 218709744

Start: 1877818

End: 1878315

Strand: Direct

Name: hcpA [H]

Synonym: VS_1756

Alternate gene names: 218709744

Gene position: 1877818-1878315 (Clockwise)

Preceding gene: 218709743

Following gene: 218709745

Centisome position: 56.92

GC content: 41.77

Gene sequence:

>498_bases
ATGTGTACAAAAGCTTACCTCTCTATCGAGAGTATTACTAGTGGCTGTCTATCAACAGGCTGTAATACTTTTTACTCAAT
GGGTAACAGCTACCAGTTAGGTCACGAAGATGAAATTACAGTCCTTTCTTTCTCTCATTCAATAGCTCACGATAGTCGAT
CTGTCCATGCTCCGATTCAAATTGTTAAAAAGATTGATAAGTCTTCGCCAGTTTTAGCCCAAGCATGTTCTGATGGCGAG
GAGTTAAAATGTCGTTTGACCTTTTATCGACCAAATCACAAAGGTGGGGATGAACTTTTTTATGAAATAACACTAAGTGG
TGCACTGATTCGGTCGGTTTCATCTCATATGCCTCATGTCGTCGACTTTAACGACAGTGAAATGACGGAAACAGTAGCAA
TCGCATACAGAGACATCAACTGGCGTCACGTTGGCGCAAACACTGCCGCGTTTGCCACTTGGCTGCAACCATTTTCAGAG
TTACAGGAAAAGAACTAA

Upstream 100 bases:

>100_bases
TATTATATTCATTTTACCTATTAATAACCCCGATATGTAAGGTGCTCGACTTATCGCACTCTGCTAACATTACGGTACAT
TAAAAATCAGGAAAAATTCA

Downstream 100 bases:

>100_bases
TCGATGAGTCATACTTCAGAACAAGTTGAAGAAGACGGAGTAAGAGTCGCTGTAAGAGGCTTACTTCGCCAAGCTAATAT
GTACAGTATGAGCCACTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MCTKAYLSIESITSGCLSTGCNTFYSMGNSYQLGHEDEITVLSFSHSIAHDSRSVHAPIQIVKKIDKSSPVLAQACSDGE
ELKCRLTFYRPNHKGGDELFYEITLSGALIRSVSSHMPHVVDFNDSEMTETVAIAYRDINWRHVGANTAAFATWLQPFSE
LQEKN

Sequences:

>Translated_165_residues
MCTKAYLSIESITSGCLSTGCNTFYSMGNSYQLGHEDEITVLSFSHSIAHDSRSVHAPIQIVKKIDKSSPVLAQACSDGE
ELKCRLTFYRPNHKGGDELFYEITLSGALIRSVSSHMPHVVDFNDSEMTETVAIAYRDINWRHVGANTAAFATWLQPFSE
LQEKN
>Mature_165_residues
MCTKAYLSIESITSGCLSTGCNTFYSMGNSYQLGHEDEITVLSFSHSIAHDSRSVHAPIQIVKKIDKSSPVLAQACSDGE
ELKCRLTFYRPNHKGGDELFYEITLSGALIRSVSSHMPHVVDFNDSEMTETVAIAYRDINWRHVGANTAAFATWLQPFSE
LQEKN

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

Organism=Escherichia coli, GI1789850, Length=149, Percent_Identity=35.5704697986577, Blast_Score=78, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 18353; Mature: 18353

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCTKAYLSIESITSGCLSTGCNTFYSMGNSYQLGHEDEITVLSFSHSIAHDSRSVHAPIQ
CCCHHHEEHHHHHHHHHHHCCHHHHHCCCCEECCCCCCEEEEEECCHHHCCCCCCHHHHH
IVKKIDKSSPVLAQACSDGEELKCRLTFYRPNHKGGDELFYEITLSGALIRSVSSHMPHV
HHHHHCCCCCHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEEEEECHHHHHHHHHHCCEE
VDFNDSEMTETVAIAYRDINWRHVGANTAAFATWLQPFSELQEKN
EECCCCHHHHEEEEEEECCCEEEECCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MCTKAYLSIESITSGCLSTGCNTFYSMGNSYQLGHEDEITVLSFSHSIAHDSRSVHAPIQ
CCCHHHEEHHHHHHHHHHHCCHHHHHCCCCEECCCCCCEEEEEECCHHHCCCCCCHHHHH
IVKKIDKSSPVLAQACSDGEELKCRLTFYRPNHKGGDELFYEITLSGALIRSVSSHMPHV
HHHHHCCCCCHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEEEEECHHHHHHHHHHCCEE
VDFNDSEMTETVAIAYRDINWRHVGANTAAFATWLQPFSELQEKN
EECCCCHHHHEEEEEEECCCEEEECCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]