| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709709
Identifier: 218709709
GI number: 218709709
Start: 1846395
End: 1847174
Strand: Direct
Name: 218709709
Synonym: VS_1720
Alternate gene names: NA
Gene position: 1846395-1847174 (Clockwise)
Preceding gene: 218709708
Following gene: 218709712
Centisome position: 55.96
GC content: 45.64
Gene sequence:
>780_bases ATGAGTGTATTTCTCCGTACGACGGCCCTAATGCTTCTGGTATTGAGCCGAGCGCCTGCATTCGCAGCAGCACCTGTTTC AACAAGTTCAACAGATCAATCGCGTACAGCGTCATCGCAAAACCAAGTTTCATCAAATGTATTCCGCCATAGTCTAAGCG GCTTGTATGGCATAAAAGCATTCGACTCACGTCCTACTCAGCCTTACACCGACTTCGATATTCTGTACAGCAAAGCGCAT CAAGGCCAAGCTGAACTAGAAACTATCTGTAAAAGTACTGCCCTACTCACCAACTCTGAAGCGCTCTTTGCTGGCGTTAA ATCTCAAGCTCGTGCAGAAGAAAAAATCGCTCTTGAGCTTGATGGTGACGTAACAAAAATTACCGACTTAGCCCGAGCAA CTATCATCGCGAACGATGTAGAAAGCTTGGTTGAAGTTTACGAAGCGCTAAGCCGTGAAGCAGACGTTGTTAAGCTGAAA AACAAGTTTAAATCGCCAGCTGATTCTGGCTACCGTGACCTTAACTTGTTGGTTCGTTTACCTAAAACCAACATCATTGC AGAGGTTCAACTTCACTTGAAAGCGATTGCTGATGTGAAAAGTGGCCCTGAGCACGAACTCTACGAAATCATCCAAGGCA TTGAGCGTCACGCAATTGCAGAACATCGCCCAATCAACGATATCGAAGCGGCACAAATCAATAGCCTAAGACGCCAATCT TTAGAGCTTTACCAACAAGCATGGCAACCGTACATTACCACGCACATTAAAGCGGCATAA
Upstream 100 bases:
>100_bases TTAATATGTAGTGAGTTAAGTTAAGCTGTTTTTACTCTTTTGCGTTACTGGTTACCCCTTTTGACTACCCGTTTTTGTAA CCTTGTATTTTGGAGTTTGA
Downstream 100 bases:
>100_bases CCACTGGCATAAACGCTTACCATAAACAAGAACGACAAAGGGCTGCATAATCGCAGCCCTTTCTTTTTATTAGTGCTCTC GCGTTGCTTTCATTAGTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MSVFLRTTALMLLVLSRAPAFAAAPVSTSSTDQSRTASSQNQVSSNVFRHSLSGLYGIKAFDSRPTQPYTDFDILYSKAH QGQAELETICKSTALLTNSEALFAGVKSQARAEEKIALELDGDVTKITDLARATIIANDVESLVEVYEALSREADVVKLK NKFKSPADSGYRDLNLLVRLPKTNIIAEVQLHLKAIADVKSGPEHELYEIIQGIERHAIAEHRPINDIEAAQINSLRRQS LELYQQAWQPYITTHIKAA
Sequences:
>Translated_259_residues MSVFLRTTALMLLVLSRAPAFAAAPVSTSSTDQSRTASSQNQVSSNVFRHSLSGLYGIKAFDSRPTQPYTDFDILYSKAH QGQAELETICKSTALLTNSEALFAGVKSQARAEEKIALELDGDVTKITDLARATIIANDVESLVEVYEALSREADVVKLK NKFKSPADSGYRDLNLLVRLPKTNIIAEVQLHLKAIADVKSGPEHELYEIIQGIERHAIAEHRPINDIEAAQINSLRRQS LELYQQAWQPYITTHIKAA >Mature_258_residues SVFLRTTALMLLVLSRAPAFAAAPVSTSSTDQSRTASSQNQVSSNVFRHSLSGLYGIKAFDSRPTQPYTDFDILYSKAHQ GQAELETICKSTALLTNSEALFAGVKSQARAEEKIALELDGDVTKITDLARATIIANDVESLVEVYEALSREADVVKLKN KFKSPADSGYRDLNLLVRLPKTNIIAEVQLHLKAIADVKSGPEHELYEIIQGIERHAIAEHRPINDIEAAQINSLRRQSL ELYQQAWQPYITTHIKAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28606; Mature: 28475
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVFLRTTALMLLVLSRAPAFAAAPVSTSSTDQSRTASSQNQVSSNVFRHSLSGLYGIKA CCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEE FDSRPTQPYTDFDILYSKAHQGQAELETICKSTALLTNSEALFAGVKSQARAEEKIALEL CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEE DGDVTKITDLARATIIANDVESLVEVYEALSREADVVKLKNKFKSPADSGYRDLNLLVRL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEHEEEC PKTNIIAEVQLHLKAIADVKSGPEHELYEIIQGIERHAIAEHRPINDIEAAQINSLRRQS CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LELYQQAWQPYITTHIKAA HHHHHHHCCHHHHHHCCCC >Mature Secondary Structure SVFLRTTALMLLVLSRAPAFAAAPVSTSSTDQSRTASSQNQVSSNVFRHSLSGLYGIKA CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEE FDSRPTQPYTDFDILYSKAHQGQAELETICKSTALLTNSEALFAGVKSQARAEEKIALEL CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEE DGDVTKITDLARATIIANDVESLVEVYEALSREADVVKLKNKFKSPADSGYRDLNLLVRL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEHEEEC PKTNIIAEVQLHLKAIADVKSGPEHELYEIIQGIERHAIAEHRPINDIEAAQINSLRRQS CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LELYQQAWQPYITTHIKAA HHHHHHHCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA