Click here to switch to the map view.

The map label for this gene is ycbC [C]

Identifier: 218709695

GI number: 218709695

Start: 1832705

End: 1833466

Strand: Direct

Name: ycbC [C]

Synonym: VS_1706

Alternate gene names: 218709695

Gene position: 1832705-1833466 (Clockwise)

Preceding gene: 218709694

Following gene: 218709697

Centisome position: 55.55

GC content: 42.26

Gene sequence:

>762_bases
ATGAGCTTTATTATCTTATTACTTCTTCTGGTATTCGTTGGCGTTACACGTTTACTTCAGTGGCGAAAAACCTCTAGTTT
TATCAAACTTCTTCTTATCTCTTTATTTGTATTGATTGGTTCGGGTTTAATTCCTCGCTATCTATTAAATGACCTGCAAG
CCAATTATGAGCGCAAGCCTGACATTCAGTGGACCTCTCACAATGCCATTGTCTTGCTTGGTGCAGGTACTCAGCTCATC
GCAAGTACACAAGAATTTGAGCCGACCTTTTTCTCGTTCGGTCGTATCAATGAAACGGCAAGCCAATATAAAAACTGTGC
GAAGGCTCAAACGATATGTAAAGTAATCGTTAGTGGTGGAGATGCACAAAATAATGGTGTAACCGAAGCGGAAGTTTATC
AACAGCAGTTGCTTAGACTCGGCGTTCCACGAGCCGATATCATCCAAGAACCGAATAGCGTCAACACTTGGAAAAACGCA
CAGCTCACTAGTGACCTAATGAAGCATCACCAGTTCGACAACATTGTTCTTGTTTCATCAGGCCTGCATATTCGTCGTAG
TGAACTCTACTTTAATCATTTTGGATTAAACGTCATCCCACTACGAGCCGACTACATGGCTGCTCAAATTTCATGGTTAC
CATTATGGTACAACTTCGCAGTTACAGACTTTGCATTGCATGAACAATTGGGTTTTGCTCGTTACAACCTTTACAACTTT
ATGGGTTGGAACAGCAAACGTGAGAAGCCCGGTGACGCCTGA

Upstream 100 bases:

>100_bases
AGCGCTATAGGTTGACTGTGAAATATCAGTAAAGCTGATATATTACGCGACGCTTCAAACATGCCTATCATTCTGGCACC
CGTTCGATAACAGGATCCTC

Downstream 100 bases:

>100_bases
TCGCTTCAACCATGATCTAACTAGTTAGCTATTTAGCTATTTAGCTATTTAGCTATTTAGCTAGTGGTCATTTAGTATCT
AGAAGATTCACAGCTCATAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MSFIILLLLLVFVGVTRLLQWRKTSSFIKLLLISLFVLIGSGLIPRYLLNDLQANYERKPDIQWTSHNAIVLLGAGTQLI
ASTQEFEPTFFSFGRINETASQYKNCAKAQTICKVIVSGGDAQNNGVTEAEVYQQQLLRLGVPRADIIQEPNSVNTWKNA
QLTSDLMKHHQFDNIVLVSSGLHIRRSELYFNHFGLNVIPLRADYMAAQISWLPLWYNFAVTDFALHEQLGFARYNLYNF
MGWNSKREKPGDA

Sequences:

>Translated_253_residues
MSFIILLLLLVFVGVTRLLQWRKTSSFIKLLLISLFVLIGSGLIPRYLLNDLQANYERKPDIQWTSHNAIVLLGAGTQLI
ASTQEFEPTFFSFGRINETASQYKNCAKAQTICKVIVSGGDAQNNGVTEAEVYQQQLLRLGVPRADIIQEPNSVNTWKNA
QLTSDLMKHHQFDNIVLVSSGLHIRRSELYFNHFGLNVIPLRADYMAAQISWLPLWYNFAVTDFALHEQLGFARYNLYNF
MGWNSKREKPGDA
>Mature_252_residues
SFIILLLLLVFVGVTRLLQWRKTSSFIKLLLISLFVLIGSGLIPRYLLNDLQANYERKPDIQWTSHNAIVLLGAGTQLIA
STQEFEPTFFSFGRINETASQYKNCAKAQTICKVIVSGGDAQNNGVTEAEVYQQQLLRLGVPRADIIQEPNSVNTWKNAQ
LTSDLMKHHQFDNIVLVSSGLHIRRSELYFNHFGLNVIPLRADYMAAQISWLPLWYNFAVTDFALHEQLGFARYNLYNFM
GWNSKREKPGDA

Specific function: Unknown

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28816; Mature: 28684

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFIILLLLLVFVGVTRLLQWRKTSSFIKLLLISLFVLIGSGLIPRYLLNDLQANYERKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
DIQWTSHNAIVLLGAGTQLIASTQEFEPTFFSFGRINETASQYKNCAKAQTICKVIVSGG
CCEEECCCEEEEEECCHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
DAQNNGVTEAEVYQQQLLRLGVPRADIIQEPNSVNTWKNAQLTSDLMKHHQFDNIVLVSS
CCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC
GLHIRRSELYFNHFGLNVIPLRADYMAAQISWLPLWYNFAVTDFALHEQLGFARYNLYNF
CCEEEHHHHEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
MGWNSKREKPGDA
CCCCCCCCCCCCC
>Mature Secondary Structure 
SFIILLLLLVFVGVTRLLQWRKTSSFIKLLLISLFVLIGSGLIPRYLLNDLQANYERKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
DIQWTSHNAIVLLGAGTQLIASTQEFEPTFFSFGRINETASQYKNCAKAQTICKVIVSGG
CCEEECCCEEEEEECCHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
DAQNNGVTEAEVYQQQLLRLGVPRADIIQEPNSVNTWKNAQLTSDLMKHHQFDNIVLVSS
CCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC
GLHIRRSELYFNHFGLNVIPLRADYMAAQISWLPLWYNFAVTDFALHEQLGFARYNLYNF
CCEEEHHHHEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
MGWNSKREKPGDA
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA