Click here to switch to the map view.

The map label for this gene is 218709658

Identifier: 218709658

GI number: 218709658

Start: 1795406

End: 1795597

Strand: Reverse

Name: 218709658

Synonym: VS_1668

Alternate gene names: NA

Gene position: 1795597-1795406 (Counterclockwise)

Preceding gene: 218709659

Following gene: 218709655

Centisome position: 54.42

GC content: 44.79

Gene sequence:

>192_bases
ATGCCAAACGTAACCACTCGCTTAATTCGTCTCAATGAAGTACTAGTAATGACTGGCTTATCAAGGTCGGGAATGTATCG
CTCTATAGAAAAACAGCAGTTTCCATCACAGGTGCCAATTGGAGATAGAGCCGTCGCATGGGTAGAAAGTGAGGTTCAAG
ATTGGGTCCGCCAAAGAGTGCTAAACAGGTAA

Upstream 100 bases:

>100_bases
GGGATTGGCATAGGGTACGGTTTTTCTATGGTGCATATAACCTAAATAATTTCAGACATATGTCATTTAAGTGAAATCCA
CTCACTTGTAAGGTGTCAAT

Downstream 100 bases:

>100_bases
AATTAAATATTGGAGAGCTTTATAGCTCTCCAAGCATGCTATAGAAGCTTAGAGAATTGTGTGGCTTTATTTTTTTTATC
TTCTTCAATGCTTCTCATTA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Phage Transcriptional Regulator AlpA

Number of amino acids: Translated: 63; Mature: 62

Protein sequence:

>63_residues
MPNVTTRLIRLNEVLVMTGLSRSGMYRSIEKQQFPSQVPIGDRAVAWVESEVQDWVRQRVLNR

Sequences:

>Translated_63_residues
MPNVTTRLIRLNEVLVMTGLSRSGMYRSIEKQQFPSQVPIGDRAVAWVESEVQDWVRQRVLNR
>Mature_62_residues
PNVTTRLIRLNEVLVMTGLSRSGMYRSIEKQQFPSQVPIGDRAVAWVESEVQDWVRQRVLNR

Specific function: Unknown

COG id: COG3311

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7343; Mature: 7211

Theoretical pI: Translated: 11.19; Mature: 11.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNVTTRLIRLNEVLVMTGLSRSGMYRSIEKQQFPSQVPIGDRAVAWVESEVQDWVRQRV
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
LNR
CCC
>Mature Secondary Structure 
PNVTTRLIRLNEVLVMTGLSRSGMYRSIEKQQFPSQVPIGDRAVAWVESEVQDWVRQRV
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
LNR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA