| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is 218709656
Identifier: 218709656
GI number: 218709656
Start: 1794412
End: 1795107
Strand: Direct
Name: 218709656
Synonym: VS_1666
Alternate gene names: NA
Gene position: 1794412-1795107 (Clockwise)
Preceding gene: 218709653
Following gene: 218709657
Centisome position: 54.39
GC content: 36.06
Gene sequence:
>696_bases ATGCCAAGATTTGATAATCCGCCAGAAAAAGTAATGTGCTTTGAGTTCCTTGAACAATATGACATATATCAACTTGCGGG AATTTCCCAACATCTAAATCACAAGCAAAGCGTTGACTTTAATTTCCAATCGAGCCCAAAATTAACTTCGGAAAGGTATA AATCAGAAATAGTGGGGTACTTCAAGAATGCAACGGACATGCTAGGCGGGTTATACAATACACCAGAGTCAAAAGTCAGA ACGATCTCCTATGATGTACTTTCATTGAGCGATATGCGGTTTTCAACCACAAAAGACACTCGACTTATAATCTACATATT TACAAAAATTGTGACAAATAACCTCATTCAACATTTACCAGAAACACCGCCAAACACTATCACCGACATTAATTCGATGC TGAATTACCTCATCAATGCATTTATCTCATCACAAATACAAGTCGAGAAAAAAAGAGAGTTAATCAATAGTATAATTGAC GAGTACTACAGCTCATCAGAAGTGTTTAAATTTAACTGGCTTGATGATAAAAATAATGACCAGGTGGCGTGGGTAGTTGA CTATTTTCCCAAAATATCCTCAGTAAAGATCATCGTTGCTAAATTGCCAAACGTAATGAACATCAATGAAAGTCACACTA AAGTCGTTCCGGCTATTTTTCATTCACTAGATATTAGCAACGCTGAAAAAAACTGA
Upstream 100 bases:
>100_bases TGAACTAGCTCTATATACAATCAAAAAACACTGTAAAACAATCAGAAAATAGCTTATAAATCACCCAGCAATCACACAAA AATACTACTAAGTAATCACT
Downstream 100 bases:
>100_bases TCATGATGAACTTCAAAAGAGCATGGTCGCAGAAGAAATATAGGGAAAAAACCACAAGGGAAAACAAAAAAACCTTAAAT ATCGTTGTTGACGAAACGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 231; Mature: 230
Protein sequence:
>231_residues MPRFDNPPEKVMCFEFLEQYDIYQLAGISQHLNHKQSVDFNFQSSPKLTSERYKSEIVGYFKNATDMLGGLYNTPESKVR TISYDVLSLSDMRFSTTKDTRLIIYIFTKIVTNNLIQHLPETPPNTITDINSMLNYLINAFISSQIQVEKKRELINSIID EYYSSSEVFKFNWLDDKNNDQVAWVVDYFPKISSVKIIVAKLPNVMNINESHTKVVPAIFHSLDISNAEKN
Sequences:
>Translated_231_residues MPRFDNPPEKVMCFEFLEQYDIYQLAGISQHLNHKQSVDFNFQSSPKLTSERYKSEIVGYFKNATDMLGGLYNTPESKVR TISYDVLSLSDMRFSTTKDTRLIIYIFTKIVTNNLIQHLPETPPNTITDINSMLNYLINAFISSQIQVEKKRELINSIID EYYSSSEVFKFNWLDDKNNDQVAWVVDYFPKISSVKIIVAKLPNVMNINESHTKVVPAIFHSLDISNAEKN >Mature_230_residues PRFDNPPEKVMCFEFLEQYDIYQLAGISQHLNHKQSVDFNFQSSPKLTSERYKSEIVGYFKNATDMLGGLYNTPESKVRT ISYDVLSLSDMRFSTTKDTRLIIYIFTKIVTNNLIQHLPETPPNTITDINSMLNYLINAFISSQIQVEKKRELINSIIDE YYSSSEVFKFNWLDDKNNDQVAWVVDYFPKISSVKIIVAKLPNVMNINESHTKVVPAIFHSLDISNAEKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26740; Mature: 26609
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRFDNPPEKVMCFEFLEQYDIYQLAGISQHLNHKQSVDFNFQSSPKLTSERYKSEIVGY CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH FKNATDMLGGLYNTPESKVRTISYDVLSLSDMRFSTTKDTRLIIYIFTKIVTNNLIQHLP HHHHHHHHCCCCCCCHHHEEEEEHHHHEECCCEEECCCCCEEEHHHHHHHHHHHHHHHCC ETPPNTITDINSMLNYLINAFISSQIQVEKKRELINSIIDEYYSSSEVFKFNWLDDKNND CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC QVAWVVDYFPKISSVKIIVAKLPNVMNINESHTKVVPAIFHSLDISNAEKN EEEEEEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure PRFDNPPEKVMCFEFLEQYDIYQLAGISQHLNHKQSVDFNFQSSPKLTSERYKSEIVGY CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH FKNATDMLGGLYNTPESKVRTISYDVLSLSDMRFSTTKDTRLIIYIFTKIVTNNLIQHLP HHHHHHHHCCCCCCCHHHEEEEEHHHHEECCCEEECCCCCEEEHHHHHHHHHHHHHHHCC ETPPNTITDINSMLNYLINAFISSQIQVEKKRELINSIIDEYYSSSEVFKFNWLDDKNND CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC QVAWVVDYFPKISSVKIIVAKLPNVMNINESHTKVVPAIFHSLDISNAEKN EEEEEEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA