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The map label for this gene is ydcP [H]

Identifier: 218709557

GI number: 218709557

Start: 1698494

End: 1700749

Strand: Reverse

Name: ydcP [H]

Synonym: VS_1567

Alternate gene names: 218709557

Gene position: 1700749-1698494 (Counterclockwise)

Preceding gene: 218709561

Following gene: 218709554

Centisome position: 51.55

GC content: 44.95

Gene sequence:

>2256_bases
ATGAGCAGAAAGATTGAGTTATTAGCCCCAGGTGGCGATGTCGAGGCGATTAAAGCCGCTATCGTGGCCGGTGCCAATGC
GGTTTATTGTGGTTTAGACACCTTCAACGCTCGTAACAGAGCCTCTAACCTTTCGTTAGATGAGTTGAATGGTGTGATTC
GCCTTGCTCATGAATATGGTTGTGAAGTGTTTCTGACTCTTAACGTTGTGCTGCTGGAGCATGAAATTAAGACTATCACT
AAATTGCTGAACCAACTGGTGAACACCAAACTAGACGGCATCATCGTTCAAGATCTTGGTTTGTTTGATTTGGTGAAAAA
GCATTTCCCATCGTTAGATGTTCACGCATCGACTCAGTTAACGACGCACAACGAAGGCCAGATTAAGTTCTTGTCTAAGA
TTGGCGCGACGCGGGTTAACTTATCTCGTGAATTGAACCTACCAGAAATCAAAATGCTGACGGAAGTGGCACACGATCAC
GATGTTCTAACTGAAGTGTTTGTACATGGCGCTTTGTGTATCGCATTCTCTGGCCAATGTTACTCAAGCTCAGTAAGTGT
CGGTAACTCAGGTAACCGTGGGCGTTGTAGCCAAGCGTGTCGTGATGAATACGAAATCACCAACGCAGGCAACAAGTTCC
CACTGAACCTGAAAGATAATTCAGCGTACTACGACCTACCTGAACTGGTTGACGCGAAAGTTGACTCGTTGAAAGTAGAA
GGCCGTATTAAAGGCGCACACTACGTATACACTGTGGTAGACACGTGGCGCAAACAGATTGATAGCTTTGTAGAAAGTGG
TTTGTTGATCGAAGACGATTCAAACCTACACAAAGTATTCAACCGTGATTTCACCAACTCTTTCCTTGAGGGCAACCTAA
CGAAAGACATGTTCATTGATAATCCTCGTGACAACAGCATGAACTACGCCGTTGATAAAGCGACGAAAGAGAACAATGAA
ATCTCTGTTGTGCAAATTCAAGAAGTAACTAGCGATCTTTACGAAGCTAAGAATGCGCTAGGTAGCGAAATGCGCGACAA
GATCGAGTTCCTTGATATTCGTAAAACACCGGTGTCATTGTCGTTTAGCGCTAAGGTGGGTCAGCCATTTACGGTGACAG
TGAACACACCAAAAGAAAACTTTACGGTTCAATCTCAATCGTTATTGGCAACAGCTAAAGAGACTGCGATTACTCAGGCG
TTACTTGAAAAGCGTTTCAAGTCAGTGAAGAGTGCTGTTCATACGCTTGAAAACTGTAACTACGACAACTTGATTGAAGG
TCTGATTCTTCCTTTGAAAGAAGTGTCGGTCTTAAAAGACGAAATCGATTTCATCTTAAACGGTTCTGTGAAAGTGATTA
AGCACGTTGAAGTGCCAGCACTGCCTCAGCAACCGAAGGTGAACGAGAAGCCAACTATGTCGATGCTTATCGCTGATGTG
GAAGACTTGCACCTGTGTGACGTAACTGACGCGGATGTTTACTTCAAACTGCCTGAAAGCTTCAAGAAGCGTTGTAACAA
GTACATCGATATCTTGGCAGCAAACCCACGTTTGATTCCTTGGTTCCCTGCAGTATTGATCGGCAAAGATTACGATGAAG
CAGTTCGTATCCTTGAAGAGATCAAGCCAGCTCGCATCGTGACCAACAACACGGGTATTGCCTACAAAGCTTACGAGATG
GGAATTGAGTGGGTAGCAGGCCCGTTCATGAACACCACAAACTCTCACGCATTGGTTACGCTGAAAGAAGAGCTAAACTG
TGCTGGTGCTTTCATTTCGAACGAGATCAACAAAGGTCAGATTCGTCATATTCGCCGTCCAGAGAACTTCAAACTGTTCT
ACAGCATCTACCACCCAATCTTGATGATGACCAGCCGCCAGTGTTTCTTCCAAAGAACCGTGGGTTGTAACAAGCCAAGC
ATCGAAGCCGGTTGTATGTTGAAGTGTGAGAAAGCGACCACGATTACCAACGTGAAAGGCATCTCTTTCGCGGTTGATAA
ACAGAAGGGTGGCTACCCAAGCATTTACAACCACGAGCAGTTCTTAAACCATGACGCTGTAACGGATTTCTCAGGTCTGT
TTGACGAGTTCTTCATCGACCTAACCAACATCGGCGCGGGTTCGAAAGAAGTACAAGACAAAGTAGAGCTGATCAAACAC
TTCCAAGGTTTGATTGACGGCGTTGATGGTTCACAACAGAACCTAGAGCAGATGGTTGAAGTTAGAACTAACGCTCAATA
CGTTCAAGGTCTATAG

Upstream 100 bases:

>100_bases
GAGGTCATTTAGTTTGGAAAGTGTTGTTAGGTGGTAAAGAGATCGTGTTGTAGGTAGAATACGCGCCTTAAAAATTATAA
GTAAGTGAGCGACTTCAAAA

Downstream 100 bases:

>100_bases
CCAAAAGCTTCTAAGTCCAGAAGATCAAAAAAAGCCACTCAATCGAGTGGCTTTTTAATGTCTGAAATTTTCTGAGTCTT
TTTCAATTAGCGAATAGGTT

Product: collagenase and related protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 751; Mature: 750

Protein sequence:

>751_residues
MSRKIELLAPGGDVEAIKAAIVAGANAVYCGLDTFNARNRASNLSLDELNGVIRLAHEYGCEVFLTLNVVLLEHEIKTIT
KLLNQLVNTKLDGIIVQDLGLFDLVKKHFPSLDVHASTQLTTHNEGQIKFLSKIGATRVNLSRELNLPEIKMLTEVAHDH
DVLTEVFVHGALCIAFSGQCYSSSVSVGNSGNRGRCSQACRDEYEITNAGNKFPLNLKDNSAYYDLPELVDAKVDSLKVE
GRIKGAHYVYTVVDTWRKQIDSFVESGLLIEDDSNLHKVFNRDFTNSFLEGNLTKDMFIDNPRDNSMNYAVDKATKENNE
ISVVQIQEVTSDLYEAKNALGSEMRDKIEFLDIRKTPVSLSFSAKVGQPFTVTVNTPKENFTVQSQSLLATAKETAITQA
LLEKRFKSVKSAVHTLENCNYDNLIEGLILPLKEVSVLKDEIDFILNGSVKVIKHVEVPALPQQPKVNEKPTMSMLIADV
EDLHLCDVTDADVYFKLPESFKKRCNKYIDILAANPRLIPWFPAVLIGKDYDEAVRILEEIKPARIVTNNTGIAYKAYEM
GIEWVAGPFMNTTNSHALVTLKEELNCAGAFISNEINKGQIRHIRRPENFKLFYSIYHPILMMTSRQCFFQRTVGCNKPS
IEAGCMLKCEKATTITNVKGISFAVDKQKGGYPSIYNHEQFLNHDAVTDFSGLFDEFFIDLTNIGAGSKEVQDKVELIKH
FQGLIDGVDGSQQNLEQMVEVRTNAQYVQGL

Sequences:

>Translated_751_residues
MSRKIELLAPGGDVEAIKAAIVAGANAVYCGLDTFNARNRASNLSLDELNGVIRLAHEYGCEVFLTLNVVLLEHEIKTIT
KLLNQLVNTKLDGIIVQDLGLFDLVKKHFPSLDVHASTQLTTHNEGQIKFLSKIGATRVNLSRELNLPEIKMLTEVAHDH
DVLTEVFVHGALCIAFSGQCYSSSVSVGNSGNRGRCSQACRDEYEITNAGNKFPLNLKDNSAYYDLPELVDAKVDSLKVE
GRIKGAHYVYTVVDTWRKQIDSFVESGLLIEDDSNLHKVFNRDFTNSFLEGNLTKDMFIDNPRDNSMNYAVDKATKENNE
ISVVQIQEVTSDLYEAKNALGSEMRDKIEFLDIRKTPVSLSFSAKVGQPFTVTVNTPKENFTVQSQSLLATAKETAITQA
LLEKRFKSVKSAVHTLENCNYDNLIEGLILPLKEVSVLKDEIDFILNGSVKVIKHVEVPALPQQPKVNEKPTMSMLIADV
EDLHLCDVTDADVYFKLPESFKKRCNKYIDILAANPRLIPWFPAVLIGKDYDEAVRILEEIKPARIVTNNTGIAYKAYEM
GIEWVAGPFMNTTNSHALVTLKEELNCAGAFISNEINKGQIRHIRRPENFKLFYSIYHPILMMTSRQCFFQRTVGCNKPS
IEAGCMLKCEKATTITNVKGISFAVDKQKGGYPSIYNHEQFLNHDAVTDFSGLFDEFFIDLTNIGAGSKEVQDKVELIKH
FQGLIDGVDGSQQNLEQMVEVRTNAQYVQGL
>Mature_750_residues
SRKIELLAPGGDVEAIKAAIVAGANAVYCGLDTFNARNRASNLSLDELNGVIRLAHEYGCEVFLTLNVVLLEHEIKTITK
LLNQLVNTKLDGIIVQDLGLFDLVKKHFPSLDVHASTQLTTHNEGQIKFLSKIGATRVNLSRELNLPEIKMLTEVAHDHD
VLTEVFVHGALCIAFSGQCYSSSVSVGNSGNRGRCSQACRDEYEITNAGNKFPLNLKDNSAYYDLPELVDAKVDSLKVEG
RIKGAHYVYTVVDTWRKQIDSFVESGLLIEDDSNLHKVFNRDFTNSFLEGNLTKDMFIDNPRDNSMNYAVDKATKENNEI
SVVQIQEVTSDLYEAKNALGSEMRDKIEFLDIRKTPVSLSFSAKVGQPFTVTVNTPKENFTVQSQSLLATAKETAITQAL
LEKRFKSVKSAVHTLENCNYDNLIEGLILPLKEVSVLKDEIDFILNGSVKVIKHVEVPALPQQPKVNEKPTMSMLIADVE
DLHLCDVTDADVYFKLPESFKKRCNKYIDILAANPRLIPWFPAVLIGKDYDEAVRILEEIKPARIVTNNTGIAYKAYEMG
IEWVAGPFMNTTNSHALVTLKEELNCAGAFISNEINKGQIRHIRRPENFKLFYSIYHPILMMTSRQCFFQRTVGCNKPSI
EAGCMLKCEKATTITNVKGISFAVDKQKGGYPSIYNHEQFLNHDAVTDFSGLFDEFFIDLTNIGAGSKEVQDKVELIKHF
QGLIDGVDGSQQNLEQMVEVRTNAQYVQGL

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=318, Percent_Identity=37.4213836477987, Blast_Score=209, Evalue=5e-55,
Organism=Escherichia coli, GI1788397, Length=350, Percent_Identity=29.4285714285714, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI1789548, Length=296, Percent_Identity=30.4054054054054, Blast_Score=121, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 83931; Mature: 83800

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKIELLAPGGDVEAIKAAIVAGANAVYCGLDTFNARNRASNLSLDELNGVIRLAHEYG
CCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
CEVFLTLNVVLLEHEIKTITKLLNQLVNTKLDGIIVQDLGLFDLVKKHFPSLDVHASTQL
CEEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHCCCCCEECCEEE
TTHNEGQIKFLSKIGATRVNLSRELNLPEIKMLTEVAHDHDVLTEVFVHGALCIAFSGQC
EECCCCCEEEHHHCCCEEEECHHCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCC
YSSSVSVGNSGNRGRCSQACRDEYEITNAGNKFPLNLKDNSAYYDLPELVDAKVDSLKVE
CCCCCCCCCCCCCCHHHHHHHCCCEECCCCCEEEEEECCCCCCCCCHHHHHCHHHCEEEE
GRIKGAHYVYTVVDTWRKQIDSFVESGLLIEDDSNLHKVFNRDFTNSFLEGNLTKDMFID
EEECCCEEEEEHHHHHHHHHHHHHHCCEEEECCCHHHHHHCCHHHHHHHCCCCCHHHCCC
NPRDNSMNYAVDKATKENNEISVVQIQEVTSDLYEAKNALGSEMRDKIEFLDIRKTPVSL
CCCCCCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEE
SFSAKVGQPFTVTVNTPKENFTVQSQSLLATAKETAITQALLEKRFKSVKSAVHTLENCN
EEEECCCCCEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YDNLIEGLILPLKEVSVLKDEIDFILNGSVKVIKHVEVPALPQQPKVNEKPTMSMLIADV
HHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCC
EDLHLCDVTDADVYFKLPESFKKRCNKYIDILAANPRLIPWFPAVLIGKDYDEAVRILEE
CCCEEECCCCCCEEEECCHHHHHHHHHHEEEEECCCCCCCCCCHHEECCCHHHHHHHHHH
IKPARIVTNNTGIAYKAYEMGIEWVAGPFMNTTNSHALVTLKEELNCAGAFISNEINKGQ
CCCCEEEECCCCCEEEHHHCCCHHHCCCCCCCCCCCEEEEEHHHCCHHHHHHHCCCCCCC
IRHIRRPENFKLFYSIYHPILMMTSRQCFFQRTVGCNKPSIEAGCMLKCEKATTITNVKG
HHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEECCCC
ISFAVDKQKGGYPSIYNHEQFLNHDAVTDFSGLFDEFFIDLTNIGAGSKEVQDKVELIKH
CEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
FQGLIDGVDGSQQNLEQMVEVRTNAQYVQGL
HHHHHCCCCCCHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure 
SRKIELLAPGGDVEAIKAAIVAGANAVYCGLDTFNARNRASNLSLDELNGVIRLAHEYG
CCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
CEVFLTLNVVLLEHEIKTITKLLNQLVNTKLDGIIVQDLGLFDLVKKHFPSLDVHASTQL
CEEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHCCCCCEECCEEE
TTHNEGQIKFLSKIGATRVNLSRELNLPEIKMLTEVAHDHDVLTEVFVHGALCIAFSGQC
EECCCCCEEEHHHCCCEEEECHHCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCC
YSSSVSVGNSGNRGRCSQACRDEYEITNAGNKFPLNLKDNSAYYDLPELVDAKVDSLKVE
CCCCCCCCCCCCCCHHHHHHHCCCEECCCCCEEEEEECCCCCCCCCHHHHHCHHHCEEEE
GRIKGAHYVYTVVDTWRKQIDSFVESGLLIEDDSNLHKVFNRDFTNSFLEGNLTKDMFID
EEECCCEEEEEHHHHHHHHHHHHHHCCEEEECCCHHHHHHCCHHHHHHHCCCCCHHHCCC
NPRDNSMNYAVDKATKENNEISVVQIQEVTSDLYEAKNALGSEMRDKIEFLDIRKTPVSL
CCCCCCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEE
SFSAKVGQPFTVTVNTPKENFTVQSQSLLATAKETAITQALLEKRFKSVKSAVHTLENCN
EEEECCCCCEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YDNLIEGLILPLKEVSVLKDEIDFILNGSVKVIKHVEVPALPQQPKVNEKPTMSMLIADV
HHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCC
EDLHLCDVTDADVYFKLPESFKKRCNKYIDILAANPRLIPWFPAVLIGKDYDEAVRILEE
CCCEEECCCCCCEEEECCHHHHHHHHHHEEEEECCCCCCCCCCHHEECCCHHHHHHHHHH
IKPARIVTNNTGIAYKAYEMGIEWVAGPFMNTTNSHALVTLKEELNCAGAFISNEINKGQ
CCCCEEEECCCCCEEEHHHCCCHHHCCCCCCCCCCCEEEEEHHHCCHHHHHHHCCCCCCC
IRHIRRPENFKLFYSIYHPILMMTSRQCFFQRTVGCNKPSIEAGCMLKCEKATTITNVKG
HHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEECCCC
ISFAVDKQKGGYPSIYNHEQFLNHDAVTDFSGLFDEFFIDLTNIGAGSKEVQDKVELIKH
CEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
FQGLIDGVDGSQQNLEQMVEVRTNAQYVQGL
HHHHHCCCCCCHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]