| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709546
Identifier: 218709546
GI number: 218709546
Start: 1688603
End: 1688797
Strand: Direct
Name: 218709546
Synonym: VS_1555
Alternate gene names: NA
Gene position: 1688603-1688797 (Clockwise)
Preceding gene: 218709544
Following gene: 218709547
Centisome position: 51.18
GC content: 34.87
Gene sequence:
>195_bases ATGGGCGCTAAACCGAACCCATCAATGTTCATTGATAAAAGACCTAGAACAAAAAACACACTCGATATAAGTGTAACCGA TTTACTGCGAGATGATGAGCCCATAAGTAACCCGCTTTACATAACTAAAGAAAGAATAATACTGAGAACCTTTTACGCAT ACTTTGAAATACTTAACAAATGCAATAGCTTATAA
Upstream 100 bases:
>100_bases TGACTCTTCATAAGCATTAAATACATCGCTATTTTTACGACCGCTAAAGTGCAGAAAACTATGAATAATAAGCATAAAGA AGGATATCAACACAACAAAT
Downstream 100 bases:
>100_bases CGAAAAGTTAAAGCGTGAACAACGCAATACCGAAACTGCCACATTCCACCCTAAACACTAAATTCAAAGCATAGTAAAAA TGCCACGCGTTGCGAATCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 64; Mature: 63
Protein sequence:
>64_residues MGAKPNPSMFIDKRPRTKNTLDISVTDLLRDDEPISNPLYITKERIILRTFYAYFEILNKCNSL
Sequences:
>Translated_64_residues MGAKPNPSMFIDKRPRTKNTLDISVTDLLRDDEPISNPLYITKERIILRTFYAYFEILNKCNSL >Mature_63_residues GAKPNPSMFIDKRPRTKNTLDISVTDLLRDDEPISNPLYITKERIILRTFYAYFEILNKCNSL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7492; Mature: 7361
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAKPNPSMFIDKRPRTKNTLDISVTDLLRDDEPISNPLYITKERIILRTFYAYFEILNK CCCCCCCCEEEECCCCCCCEEEEEHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHH CNSL HCCC >Mature Secondary Structure GAKPNPSMFIDKRPRTKNTLDISVTDLLRDDEPISNPLYITKERIILRTFYAYFEILNK CCCCCCCEEEECCCCCCCEEEEEHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHH CNSL HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA