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The map label for this gene is cph2 [H]

Identifier: 218709495

GI number: 218709495

Start: 1639310

End: 1641457

Strand: Reverse

Name: cph2 [H]

Synonym: VS_1504

Alternate gene names: 218709495

Gene position: 1641457-1639310 (Counterclockwise)

Preceding gene: 218709496

Following gene: 218709489

Centisome position: 49.75

GC content: 39.71

Gene sequence:

>2148_bases
ATGAGCAATACGCTTTACCCAAAGATCATGGGAATTATAACGCGAATCCAGAACTACCCTGGAATCAAAGGATTAAAAGA
AGTCGAAGACAGAATAACGAGTCTATGCGAAGCTAATAATCAACCGATCCCGGATTCAATCGCGCTTTTCCTTAAAGGTT
TCACAAGCTATCGCCACGATAACCTTTCTGACGCTGCTGAGCATTATAAAGCCTGCCTAAACGTCATTGCTCCTGAAGAA
ATTCAACTATATGTATTTGTCATCGGGTTACTTGCGTCTACCCATAACATTCGTGGTGATTATCAATCAGCGTATGCTTG
TTACTCAGAGACACTAGAAAACTTACACCTAGTTGATGACAATTTTAAGTCACTTATATTCTGTAATCTAAGTGACTTGC
ACTTAAGCTTAGAAAAATACGAACAAGCGAAGAAATATGCTCGTAAAGCCATTATTTCATCTCAAAATGCGAATCGTCTG
TTAGATTGTGCTGTCAGCCATTTAAACCTAGCCTATAGCTGTGCACATACAAATGAGTTTGAGCAAGCGGTTAACGCCAT
TATGGAAGCGAAAAGAATAGGCACCTCGCTTTCTAGTCACAGGACGATAGCACTTTGTCATAGTTACCTAGGGCAAACCA
TGCTCTTGTGGGGGGGCTTTGATGATAGTGATGTATTAGATGCATTTTATCAGGCAGAAGAGCACTTCAAAAAATCGAAA
GATGAGCATAATCGAAAAGAAAATTTGGTTTACTGGTTTCAATTCTTAGAACGCATTGGAGAGCGAGAACAAGCAAAAGT
AGGGTGCGCTTTTCTCGAACAGAATTTTGATCTAAAGAGTAGTTACCGTTCTTATGCTATCTATGCCCAAACTAAGGCGA
AGCTCTTTCGAGATGAAGAAGATTGGTCTGGTTTAGCGGCACTGCAAACTCAGCATGTGGAGCTTTTAGAAAAACACATG
AGAAGTTATGAGCGCGAACAGAGCGAACGTATTCTAGAAGGGGTAGGTACTCTCCAAAGCAAAAAGGAGAATAACGTTCT
AACTCAAATGCAGAAATATATGGGTGCGATCACCGATATTGGTCAATTCATTGCAACCGCTGCAGATTTAGAAAGCGTAC
TGCCTGAGATACTCCATAAGATAAATATGATTCTACCAACATCTGAGTTTGGGATTGCTATGTATGACGATAAATCAGAC
ATACTCGACTACCGCTATTTTGTTGATACTCAAGGATTAATACCGAACCTAAAAGTAGTTTGCCAAGAGAACCAAACCAT
TGGTACGTATGTGATTCGCAAGCGAGCTACCGTTCATTTTAATAGCGCGACAGATGCGGCTCTAGAACCCTATATCGGTA
AAACCACACAAGACGATAATTTCGTTACGTTTCGTGGCGAGCTTGATACTAACTCAATGATTCTAACGCCAATCATTCTT
AATGAAAAATTAATCGGCTTTCTGTCAGTTCAGCATCATCTACCAAACCAATATCAGGAACACCACTGTCAGCTTATAGA
ACATTTAGCTAGCTTTATTGCCGTGTCGCTAGAAAATCAAAAGCAACGACAGCGTTTAGAAAGTGCGAATCAAACACTCG
AAATCTTGAGTACTACTGACCCACTAACAGGTCTAGCTAATAGATATCAATTAGATAACATCACGCCAGTCTTAATACAT
AACGCTTACTACCAAAAACAATCTCTAGCGGTCCTTATGATCGATGTTGACGAGTATAAAGCTTATAACGATTTTCATGG
GCATTTAGAGGGCGACGAAGCGCTTCGTATTATCAGTCGCTTACTTAAAAAAACATTCACAACCAAGAATGACTACCTTT
TCAGATATGGCGGTGATGAGTTCATGGCGATTTGCTTCGGACAGAGTAGTAGTGATATTGAAAATAAGGTTGTCACTCTG
CGAAAGATGTTAAATGAAGTCAAATTAGCAAACCCTAAAGCTCTCTATGCGGAACAATTAACACTCTCTATTGGTGGGGT
TAACGTCGACTTAGCCAGTGACAATGTGGATCGAAACTTTAAAATGATTTGTGATATTGCAGACAAACAGCTCTATCAAA
TCAAAGAAAATGGCCGTAACAACTATAATTTGGTCGATTGCAGATTACTTAAAGTCGAGCTTGTTTAG

Upstream 100 bases:

>100_bases
AGGAAATTACCACTTATTAGCCTCATGAATGGAATGTGTAATAAGCATTTTGTGGTATACTATTCGTTATTTTTTAATCT
GGCTGACTTAAACGGAACTT

Downstream 100 bases:

>100_bases
TTCAACTCTGTATACAACCCCCCATAAAAAGAAAGCCCCTGATATCCAATATCAGGGGCTTCATCTATTTAGAGTATGTA
TTACTCTGAATTCGCTAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 715; Mature: 714

Protein sequence:

>715_residues
MSNTLYPKIMGIITRIQNYPGIKGLKEVEDRITSLCEANNQPIPDSIALFLKGFTSYRHDNLSDAAEHYKACLNVIAPEE
IQLYVFVIGLLASTHNIRGDYQSAYACYSETLENLHLVDDNFKSLIFCNLSDLHLSLEKYEQAKKYARKAIISSQNANRL
LDCAVSHLNLAYSCAHTNEFEQAVNAIMEAKRIGTSLSSHRTIALCHSYLGQTMLLWGGFDDSDVLDAFYQAEEHFKKSK
DEHNRKENLVYWFQFLERIGEREQAKVGCAFLEQNFDLKSSYRSYAIYAQTKAKLFRDEEDWSGLAALQTQHVELLEKHM
RSYEREQSERILEGVGTLQSKKENNVLTQMQKYMGAITDIGQFIATAADLESVLPEILHKINMILPTSEFGIAMYDDKSD
ILDYRYFVDTQGLIPNLKVVCQENQTIGTYVIRKRATVHFNSATDAALEPYIGKTTQDDNFVTFRGELDTNSMILTPIIL
NEKLIGFLSVQHHLPNQYQEHHCQLIEHLASFIAVSLENQKQRQRLESANQTLEILSTTDPLTGLANRYQLDNITPVLIH
NAYYQKQSLAVLMIDVDEYKAYNDFHGHLEGDEALRIISRLLKKTFTTKNDYLFRYGGDEFMAICFGQSSSDIENKVVTL
RKMLNEVKLANPKALYAEQLTLSIGGVNVDLASDNVDRNFKMICDIADKQLYQIKENGRNNYNLVDCRLLKVELV

Sequences:

>Translated_715_residues
MSNTLYPKIMGIITRIQNYPGIKGLKEVEDRITSLCEANNQPIPDSIALFLKGFTSYRHDNLSDAAEHYKACLNVIAPEE
IQLYVFVIGLLASTHNIRGDYQSAYACYSETLENLHLVDDNFKSLIFCNLSDLHLSLEKYEQAKKYARKAIISSQNANRL
LDCAVSHLNLAYSCAHTNEFEQAVNAIMEAKRIGTSLSSHRTIALCHSYLGQTMLLWGGFDDSDVLDAFYQAEEHFKKSK
DEHNRKENLVYWFQFLERIGEREQAKVGCAFLEQNFDLKSSYRSYAIYAQTKAKLFRDEEDWSGLAALQTQHVELLEKHM
RSYEREQSERILEGVGTLQSKKENNVLTQMQKYMGAITDIGQFIATAADLESVLPEILHKINMILPTSEFGIAMYDDKSD
ILDYRYFVDTQGLIPNLKVVCQENQTIGTYVIRKRATVHFNSATDAALEPYIGKTTQDDNFVTFRGELDTNSMILTPIIL
NEKLIGFLSVQHHLPNQYQEHHCQLIEHLASFIAVSLENQKQRQRLESANQTLEILSTTDPLTGLANRYQLDNITPVLIH
NAYYQKQSLAVLMIDVDEYKAYNDFHGHLEGDEALRIISRLLKKTFTTKNDYLFRYGGDEFMAICFGQSSSDIENKVVTL
RKMLNEVKLANPKALYAEQLTLSIGGVNVDLASDNVDRNFKMICDIADKQLYQIKENGRNNYNLVDCRLLKVELV
>Mature_714_residues
SNTLYPKIMGIITRIQNYPGIKGLKEVEDRITSLCEANNQPIPDSIALFLKGFTSYRHDNLSDAAEHYKACLNVIAPEEI
QLYVFVIGLLASTHNIRGDYQSAYACYSETLENLHLVDDNFKSLIFCNLSDLHLSLEKYEQAKKYARKAIISSQNANRLL
DCAVSHLNLAYSCAHTNEFEQAVNAIMEAKRIGTSLSSHRTIALCHSYLGQTMLLWGGFDDSDVLDAFYQAEEHFKKSKD
EHNRKENLVYWFQFLERIGEREQAKVGCAFLEQNFDLKSSYRSYAIYAQTKAKLFRDEEDWSGLAALQTQHVELLEKHMR
SYEREQSERILEGVGTLQSKKENNVLTQMQKYMGAITDIGQFIATAADLESVLPEILHKINMILPTSEFGIAMYDDKSDI
LDYRYFVDTQGLIPNLKVVCQENQTIGTYVIRKRATVHFNSATDAALEPYIGKTTQDDNFVTFRGELDTNSMILTPIILN
EKLIGFLSVQHHLPNQYQEHHCQLIEHLASFIAVSLENQKQRQRLESANQTLEILSTTDPLTGLANRYQLDNITPVLIHN
AYYQKQSLAVLMIDVDEYKAYNDFHGHLEGDEALRIISRLLKKTFTTKNDYLFRYGGDEFMAICFGQSSSDIENKVVTLR
KMLNEVKLANPKALYAEQLTLSIGGVNVDLASDNVDRNFKMICDIADKQLYQIKENGRNNYNLVDCRLLKVELV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=35.2941176470588, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=30.5084745762712, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=32.5966850828729, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=29.0123456790123, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787541, Length=175, Percent_Identity=30.8571428571429, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081977, Length=350, Percent_Identity=25.1428571428571, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1787816, Length=179, Percent_Identity=30.7262569832402, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1788956, Length=181, Percent_Identity=32.0441988950276, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87082007, Length=170, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 81679; Mature: 81548

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTLYPKIMGIITRIQNYPGIKGLKEVEDRITSLCEANNQPIPDSIALFLKGFTSYRHD
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
NLSDAAEHYKACLNVIAPEEIQLYVFVIGLLASTHNIRGDYQSAYACYSETLENLHLVDD
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECC
NFKSLIFCNLSDLHLSLEKYEQAKKYARKAIISSQNANRLLDCAVSHLNLAYSCAHTNEF
CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECCCHHH
EQAVNAIMEAKRIGTSLSSHRTIALCHSYLGQTMLLWGGFDDSDVLDAFYQAEEHFKKSK
HHHHHHHHHHHHHCCCHHCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHCH
DEHNRKENLVYWFQFLERIGEREQAKVGCAFLEQNFDLKSSYRSYAIYAQTKAKLFRDEE
HHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCEEEEEEHHHHHHCCCC
DWSGLAALQTQHVELLEKHMRSYEREQSERILEGVGTLQSKKENNVLTQMQKYMGAITDI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
GQFIATAADLESVLPEILHKINMILPTSEFGIAMYDDKSDILDYRYFVDTQGLIPNLKVV
HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCHHHHHHHEEECCCCCCCCCEEE
CQENQTIGTYVIRKRATVHFNSATDAALEPYIGKTTQDDNFVTFRGELDTNSMILTPIIL
EECCCCEEHHEEEECCEEEECCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEC
NEKLIGFLSVQHHLPNQYQEHHCQLIEHLASFIAVSLENQKQRQRLESANQTLEILSTTD
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEHCCCC
PLTGLANRYQLDNITPVLIHNAYYQKQSLAVLMIDVDEYKAYNDFHGHLEGDEALRIISR
CHHHHHHHHCCCCCCEEEEECHHHCCCCEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHH
LLKKTFTTKNDYLFRYGGDEFMAICFGQSSSDIENKVVTLRKMLNEVKLANPKALYAEQL
HHHHHCCCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHE
TLSIGGVNVDLASDNVDRNFKMICDIADKQLYQIKENGRNNYNLVDCRLLKVELV
EEEECCEEEEECCCCCCCCHHHEEEHHHHHHHHHHHCCCCCCEEEEEEEEEEEEC
>Mature Secondary Structure 
SNTLYPKIMGIITRIQNYPGIKGLKEVEDRITSLCEANNQPIPDSIALFLKGFTSYRHD
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
NLSDAAEHYKACLNVIAPEEIQLYVFVIGLLASTHNIRGDYQSAYACYSETLENLHLVDD
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECC
NFKSLIFCNLSDLHLSLEKYEQAKKYARKAIISSQNANRLLDCAVSHLNLAYSCAHTNEF
CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECCCHHH
EQAVNAIMEAKRIGTSLSSHRTIALCHSYLGQTMLLWGGFDDSDVLDAFYQAEEHFKKSK
HHHHHHHHHHHHHCCCHHCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHCH
DEHNRKENLVYWFQFLERIGEREQAKVGCAFLEQNFDLKSSYRSYAIYAQTKAKLFRDEE
HHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCEEEEEEHHHHHHCCCC
DWSGLAALQTQHVELLEKHMRSYEREQSERILEGVGTLQSKKENNVLTQMQKYMGAITDI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
GQFIATAADLESVLPEILHKINMILPTSEFGIAMYDDKSDILDYRYFVDTQGLIPNLKVV
HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCHHHHHHHEEECCCCCCCCCEEE
CQENQTIGTYVIRKRATVHFNSATDAALEPYIGKTTQDDNFVTFRGELDTNSMILTPIIL
EECCCCEEHHEEEECCEEEECCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEC
NEKLIGFLSVQHHLPNQYQEHHCQLIEHLASFIAVSLENQKQRQRLESANQTLEILSTTD
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEHCCCC
PLTGLANRYQLDNITPVLIHNAYYQKQSLAVLMIDVDEYKAYNDFHGHLEGDEALRIISR
CHHHHHHHHCCCCCCEEEEECHHHCCCCEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHH
LLKKTFTTKNDYLFRYGGDEFMAICFGQSSSDIENKVVTLRKMLNEVKLANPKALYAEQL
HHHHHCCCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHE
TLSIGGVNVDLASDNVDRNFKMICDIADKQLYQIKENGRNNYNLVDCRLLKVELV
EEEECCEEEEECCCCCCCCHHHEEEHHHHHHHHHHHCCCCCCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]