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The map label for this gene is hycF [C]

Identifier: 218709479

GI number: 218709479

Start: 1620588

End: 1622249

Strand: Reverse

Name: hycF [C]

Synonym: VS_1488

Alternate gene names: 218709479

Gene position: 1622249-1620588 (Counterclockwise)

Preceding gene: 218709480

Following gene: 218709478

Centisome position: 49.17

GC content: 44.22

Gene sequence:

>1662_bases
ATGCTTAAACAATTATTAGAACAAGCAACTTCAAATAACGCTAAAGCAAGACTGTATGCATTTGAAAATACAGTAGAGTT
AACAAATCTGATTCCACCTACTGTTAGCTACGAAAGCGGCGGTAATACACTTGTTATTGGTCCAACTGCGATCATTGAAA
GTGCTGCGGCGCAATTACCTCAATTAACGAGCTTAACCTTATTGTCAACAGACGGCGAAAAGGGCACAAACCCAGAACTG
TACTTCGCAAATTCGGTTCAAGTATCCGGTTTCCTTGGCACGTTTGAAGTCGTGATTGAGAGTAAAGGCACATCAAGCAA
CTTGGCAAAAGTGGCTATTAATCACGATTGTTTCGATGTGGTTTTAGACCTTTGTCTGAATAGTTGTATGACTGAAGAAG
TACCTGTTCCTGGGTATTACCCAGTAGGGCGCGGTTATCCAAAACTGGCTGAAGCACTGGAAGAGATTCCAACGCTAATG
GGCACGTTCGATAAGCCTAAGTTCTTCCGTTTAGACACCGACCTTTGTGCGCACAGTTCACGTGGCGTTAAAGGCTGTGA
GCGTTGTGTTGATGCTTGTCCTGCTGGCGCACTATCAAGTGAAGGCTCAGAGAAGACAGGTCACAAGATCGAGATTAACC
CTTACCTATGTCAGGGCGTTGGGACTTGTGCAACAAGCTGTCCTACAGAAGCGATTACCTATGCGCTTCCAAATCCTGAC
GATACGCAAAAGTTCATTGAACGTACGCTAGCTAACTATGAACATGCGGGCGGTCTGGACCCAATCGTACTTATCTGTAG
CTCACGTCATGAAACTTACAACGTGATGGCTCTTAAAGCGCTACCAGATAACGTGATTCCAATCGTTGTTGAAGAATTGC
CTTCTATTGGTATTGATACTTGGTTTGCAGCGTTAGTGAATGGCGCAACTCAGGTTCTGTTTGCTGCTTCTCGCTTTATG
CCAGAGACGATCATTCGTGTTCTGAATAACGAAGTAGGGATCGCTCAAGAGTTACTAGACCAAATCGGTGTTCCAAAAGA
AACCATCGATATCCTGTATTTAGAATCTCTACGTGAAGGGCCTCCAACACTGTATGTTGATTCGTTCGATCTTGCACTTG
GCGATCTTCAAGGAAATAAACGTCAACGTCTATTCACAGCACTTGACGCGATGTCTTCATCTCGTATTCCTGTTGAAAAC
ATTGTAGAGCTCCCTTCGAATGCGCCATACGGCACGGTTTCGTGTGAAAGCAAAGATTGTACTTTGTGTATGAGCTGTGT
GGCTGTGTGTCCAACACGTGCGCTGCATACCGATGGTGCCTCTCCATCACTTAAGTTTGTAGAGCAAGACTGTATTCAAT
GTGGTCTGTGTGAAAAGGCATGTCCTGAGAATGTTCTTACTCTGACTCCTCGTATGAATTGGGTGAAAGAAGAACGTCAG
AAGGCTGTTGTGATTCATGAAGAGAAAGCAGCGGAATGTTTACGTTGTCATAAACCATTCGCACCGCAGTCTATGATTGA
CATGTTACAAAGTAAGTTACGCGGTCACTCTCATTTCTCAGATGAGACAGCAATTAATCGTATTGCGATGTGTGAAGACT
GCCGTGTGGTAGACATGTTCGATTCAATGGCTCAAGACCCATTGAAACAATTGAAATACTAG

Upstream 100 bases:

>100_bases
GCTAAAGAGTTAGTTGTTAACGGATTACTCAGCAAGTTCTCTATCGCTTACTACAATGAAGGTTGAACAGATTATCCATG
TCCATAGATGGAACTGAGCA

Downstream 100 bases:

>100_bases
GAGTTGGCCTTGGATACTAATTTGGATCAGGCACAAGAGCCTGAGCTCGCAAAAGAATTAAAGCAAGAACAGACACTAAG
AACTGAAATCTATCTGGTTC

Product: hypothetical protein

Products: CO2; H2; oxidized ferredoxin + [C]

Alternate protein names: 4Fe-4S Ferredoxin; 4fe-4S Ferredoxin; Methyl-Viologen-Reducing Hydrogenase Delta Subunit; Polyferredoxins; Ferridoxin Protein

Number of amino acids: Translated: 553; Mature: 553

Protein sequence:

>553_residues
MLKQLLEQATSNNAKARLYAFENTVELTNLIPPTVSYESGGNTLVIGPTAIIESAAAQLPQLTSLTLLSTDGEKGTNPEL
YFANSVQVSGFLGTFEVVIESKGTSSNLAKVAINHDCFDVVLDLCLNSCMTEEVPVPGYYPVGRGYPKLAEALEEIPTLM
GTFDKPKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSEKTGHKIEINPYLCQGVGTCATSCPTEAITYALPNPD
DTQKFIERTLANYEHAGGLDPIVLICSSRHETYNVMALKALPDNVIPIVVEELPSIGIDTWFAALVNGATQVLFAASRFM
PETIIRVLNNEVGIAQELLDQIGVPKETIDILYLESLREGPPTLYVDSFDLALGDLQGNKRQRLFTALDAMSSSRIPVEN
IVELPSNAPYGTVSCESKDCTLCMSCVAVCPTRALHTDGASPSLKFVEQDCIQCGLCEKACPENVLTLTPRMNWVKEERQ
KAVVIHEEKAAECLRCHKPFAPQSMIDMLQSKLRGHSHFSDETAINRIAMCEDCRVVDMFDSMAQDPLKQLKY

Sequences:

>Translated_553_residues
MLKQLLEQATSNNAKARLYAFENTVELTNLIPPTVSYESGGNTLVIGPTAIIESAAAQLPQLTSLTLLSTDGEKGTNPEL
YFANSVQVSGFLGTFEVVIESKGTSSNLAKVAINHDCFDVVLDLCLNSCMTEEVPVPGYYPVGRGYPKLAEALEEIPTLM
GTFDKPKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSEKTGHKIEINPYLCQGVGTCATSCPTEAITYALPNPD
DTQKFIERTLANYEHAGGLDPIVLICSSRHETYNVMALKALPDNVIPIVVEELPSIGIDTWFAALVNGATQVLFAASRFM
PETIIRVLNNEVGIAQELLDQIGVPKETIDILYLESLREGPPTLYVDSFDLALGDLQGNKRQRLFTALDAMSSSRIPVEN
IVELPSNAPYGTVSCESKDCTLCMSCVAVCPTRALHTDGASPSLKFVEQDCIQCGLCEKACPENVLTLTPRMNWVKEERQ
KAVVIHEEKAAECLRCHKPFAPQSMIDMLQSKLRGHSHFSDETAINRIAMCEDCRVVDMFDSMAQDPLKQLKY
>Mature_553_residues
MLKQLLEQATSNNAKARLYAFENTVELTNLIPPTVSYESGGNTLVIGPTAIIESAAAQLPQLTSLTLLSTDGEKGTNPEL
YFANSVQVSGFLGTFEVVIESKGTSSNLAKVAINHDCFDVVLDLCLNSCMTEEVPVPGYYPVGRGYPKLAEALEEIPTLM
GTFDKPKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSEKTGHKIEINPYLCQGVGTCATSCPTEAITYALPNPD
DTQKFIERTLANYEHAGGLDPIVLICSSRHETYNVMALKALPDNVIPIVVEELPSIGIDTWFAALVNGATQVLFAASRFM
PETIIRVLNNEVGIAQELLDQIGVPKETIDILYLESLREGPPTLYVDSFDLALGDLQGNKRQRLFTALDAMSSSRIPVEN
IVELPSNAPYGTVSCESKDCTLCMSCVAVCPTRALHTDGASPSLKFVEQDCIQCGLCEKACPENVLTLTPRMNWVKEERQ
KAVVIHEEKAAECLRCHKPFAPQSMIDMLQSKLRGHSHFSDETAINRIAMCEDCRVVDMFDSMAQDPLKQLKY

Specific function: Probable Electron Transfer Protein For Hydrogenase 3 [C]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60353; Mature: 60353

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQLLEQATSNNAKARLYAFENTVELTNLIPPTVSYESGGNTLVIGPTAIIESAAAQLP
CHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCEECCCCCEEEECHHHHHHHHHHHCC
QLTSLTLLSTDGEKGTNPELYFANSVQVSGFLGTFEVVIESKGTSSNLAKVAINHDCFDV
CCCEEEEEECCCCCCCCCCEEEECCEEEEECCEEEEEEEECCCCCCCCEEEEECCCHHHH
VLDLCLNSCMTEEVPVPGYYPVGRGYPKLAEALEEIPTLMGTFDKPKFFRLDTDLCAHSS
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHCCC
RGVKGCERCVDACPAGALSSEGSEKTGHKIEINPYLCQGVGTCATSCPTEAITYALPNPD
CCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHHCCHHHHHCCCCHHHEEEECCCCC
DTQKFIERTLANYEHAGGLDPIVLICSSRHETYNVMALKALPDNVIPIVVEELPSIGIDT
HHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCEEEEEEECCCCCCHHHHHHHCCCCCHHH
WFAALVNGATQVLFAASRFMPETIIRVLNNEVGIAQELLDQIGVPKETIDILYLESLREG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCC
PPTLYVDSFDLALGDLQGNKRQRLFTALDAMSSSRIPVENIVELPSNAPYGTVSCESKDC
CCEEEEECCHHEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCH
TLCMSCVAVCPTRALHTDGASPSLKFVEQDCIQCGLCEKACPENVLTLTPRMNWVKEERQ
HHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHCCCCHHCCCCCEEEECCCHHHHHHHHC
KAVVIHEEKAAECLRCHKPFAPQSMIDMLQSKLRGHSHFSDETAINRIAMCEDCRVVDMF
CEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHH
DSMAQDPLKQLKY
HHHHHHHHHHHCC
>Mature Secondary Structure
MLKQLLEQATSNNAKARLYAFENTVELTNLIPPTVSYESGGNTLVIGPTAIIESAAAQLP
CHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCEECCCCCEEEECHHHHHHHHHHHCC
QLTSLTLLSTDGEKGTNPELYFANSVQVSGFLGTFEVVIESKGTSSNLAKVAINHDCFDV
CCCEEEEEECCCCCCCCCCEEEECCEEEEECCEEEEEEEECCCCCCCCEEEEECCCHHHH
VLDLCLNSCMTEEVPVPGYYPVGRGYPKLAEALEEIPTLMGTFDKPKFFRLDTDLCAHSS
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHCCC
RGVKGCERCVDACPAGALSSEGSEKTGHKIEINPYLCQGVGTCATSCPTEAITYALPNPD
CCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHHCCHHHHHCCCCHHHEEEECCCCC
DTQKFIERTLANYEHAGGLDPIVLICSSRHETYNVMALKALPDNVIPIVVEELPSIGIDT
HHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCEEEEEEECCCCCCHHHHHHHCCCCCHHH
WFAALVNGATQVLFAASRFMPETIIRVLNNEVGIAQELLDQIGVPKETIDILYLESLREG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCC
PPTLYVDSFDLALGDLQGNKRQRLFTALDAMSSSRIPVENIVELPSNAPYGTVSCESKDC
CCEEEEECCHHEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCH
TLCMSCVAVCPTRALHTDGASPSLKFVEQDCIQCGLCEKACPENVLTLTPRMNWVKEERQ
HHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHCCCCHHCCCCCEEEECCCHHHHHHHHC
KAVVIHEEKAAECLRCHKPFAPQSMIDMLQSKLRGHSHFSDETAINRIAMCEDCRVVDMF
CEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHH
DSMAQDPLKQLKY
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; Proton; reduced ferredoxin [C]

Specific reaction: formate = CO2 + H2 Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA