| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709464
Identifier: 218709464
GI number: 218709464
Start: 1604609
End: 1605478
Strand: Reverse
Name: 218709464
Synonym: VS_1473
Alternate gene names: NA
Gene position: 1605478-1604609 (Counterclockwise)
Preceding gene: 218709471
Following gene: 218709463
Centisome position: 48.66
GC content: 43.91
Gene sequence:
>870_bases TTGGCGCACCTAGGTATCAATATGAACAACGACATCGAAAAAGATTTTAATTTGGGCGGTAGTATCGACCGTGCACTTTC CGGCGATTATGAGCTCAAAGCAACGGCTGTATTCCAAGAGGCTTGGAAACATACGATAAGTCACTTTCTTTCGTTTTCCC CTGCGATTGTTGCGCTGATGTTCGTACAATTGGCTATCTTTTATATCGCACTAAAACTGCAACTTGGTGACCCTGCAGTT ATCTTAGATGCGGTAATCGACCCTGAGGCCTTTACACCCCAGATCGTTGAATCGATTTTCATTGCGAATTTTAGCTATGA AGTCGTCAGTGCACCTATCTATGCCGGCATCTGTTTAATGGCAATGAGCCATGCTGCAGGTCTTCAAACTAAAGTGCGCC ACATAGGCAAAGGTTTGCAGTTTACGATCCCCGTTATTCTAGTGACTTTGTTCAGCCTAATGCTTCAAGGCATCGCTGGT ATGATTCTGCCATTTCTGTCTATCTACTTCTCACTTGCGTTCAGCAACTCAATTCTGCTGATTTGTGATAAAAAAGTGCC ACCGATGCAATCGCTGTTACTTTCTCTAAGAGCAGTAAATAAGAAGATCTTCGTAGTCGCGTCTATATACCTAATGGTTA TGCTGATGTTCATCGTTGCTGCGATGATGTACGGCATTGGCTTGATCTTCGTTCTTCCATTCTTCTTCCACGTGAAAGGT ATCGTTTACCGTGAGATGTTTGGCATCAAGCTGAAAATAATTGCATCAGACCGTCCAATGAGCGATGACGATAGCGATGG CGGTAACAATAACGGCAACAACAGTAGCCATGGTAACAAGAACAAAAACCCGCAGGTCTTCGATGCGTAA
Upstream 100 bases:
>100_bases TAAAAGCAAGCCTTGTTACAGATTCATATTTTAGTTTGCATCCGACATATGGGTATAATGAAGGTAATTTTTTATCAATA AGTTAGGTGCCTTCGTTTAG
Downstream 100 bases:
>100_bases TAACGACAAAGGCAGCGCGAGTAAATCTCTTGCGCTCAAAGTAACAACACTAGCAATCGTGGGTTCTATTTCTCTGATTG GCCCTTACCTTTACCAAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MAHLGINMNNDIEKDFNLGGSIDRALSGDYELKATAVFQEAWKHTISHFLSFSPAIVALMFVQLAIFYIALKLQLGDPAV ILDAVIDPEAFTPQIVESIFIANFSYEVVSAPIYAGICLMAMSHAAGLQTKVRHIGKGLQFTIPVILVTLFSLMLQGIAG MILPFLSIYFSLAFSNSILLICDKKVPPMQSLLLSLRAVNKKIFVVASIYLMVMLMFIVAAMMYGIGLIFVLPFFFHVKG IVYREMFGIKLKIIASDRPMSDDDSDGGNNNGNNSSHGNKNKNPQVFDA
Sequences:
>Translated_289_residues MAHLGINMNNDIEKDFNLGGSIDRALSGDYELKATAVFQEAWKHTISHFLSFSPAIVALMFVQLAIFYIALKLQLGDPAV ILDAVIDPEAFTPQIVESIFIANFSYEVVSAPIYAGICLMAMSHAAGLQTKVRHIGKGLQFTIPVILVTLFSLMLQGIAG MILPFLSIYFSLAFSNSILLICDKKVPPMQSLLLSLRAVNKKIFVVASIYLMVMLMFIVAAMMYGIGLIFVLPFFFHVKG IVYREMFGIKLKIIASDRPMSDDDSDGGNNNGNNSSHGNKNKNPQVFDA >Mature_288_residues AHLGINMNNDIEKDFNLGGSIDRALSGDYELKATAVFQEAWKHTISHFLSFSPAIVALMFVQLAIFYIALKLQLGDPAVI LDAVIDPEAFTPQIVESIFIANFSYEVVSAPIYAGICLMAMSHAAGLQTKVRHIGKGLQFTIPVILVTLFSLMLQGIAGM ILPFLSIYFSLAFSNSILLICDKKVPPMQSLLLSLRAVNKKIFVVASIYLMVMLMFIVAAMMYGIGLIFVLPFFFHVKGI VYREMFGIKLKIIASDRPMSDDDSDGGNNNGNNSSHGNKNKNPQVFDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31796; Mature: 31665
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHLGINMNNDIEKDFNLGGSIDRALSGDYELKATAVFQEAWKHTISHFLSFSPAIVALM CCEECCCCCCCCCHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH FVQLAIFYIALKLQLGDPAVILDAVIDPEAFTPQIVESIFIANFSYEVVSAPIYAGICLM HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH AMSHAAGLQTKVRHIGKGLQFTIPVILVTLFSLMLQGIAGMILPFLSIYFSLAFSNSILL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE ICDKKVPPMQSLLLSLRAVNKKIFVVASIYLMVMLMFIVAAMMYGIGLIFVLPFFFHVKG EECCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IVYREMFGIKLKIIASDRPMSDDDSDGGNNNGNNSSHGNKNKNPQVFDA HHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AHLGINMNNDIEKDFNLGGSIDRALSGDYELKATAVFQEAWKHTISHFLSFSPAIVALM CEECCCCCCCCCHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH FVQLAIFYIALKLQLGDPAVILDAVIDPEAFTPQIVESIFIANFSYEVVSAPIYAGICLM HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH AMSHAAGLQTKVRHIGKGLQFTIPVILVTLFSLMLQGIAGMILPFLSIYFSLAFSNSILL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE ICDKKVPPMQSLLLSLRAVNKKIFVVASIYLMVMLMFIVAAMMYGIGLIFVLPFFFHVKG EECCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IVYREMFGIKLKIIASDRPMSDDDSDGGNNNGNNSSHGNKNKNPQVFDA HHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA