| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is ycbG [C]
Identifier: 218709422
GI number: 218709422
Start: 1573913
End: 1574368
Strand: Direct
Name: ycbG [C]
Synonym: VS_1431
Alternate gene names: 218709422
Gene position: 1573913-1574368 (Clockwise)
Preceding gene: 218709419
Following gene: 218709423
Centisome position: 47.7
GC content: 42.11
Gene sequence:
>456_bases ATGAAATATCAGCAACTTGAAAACTTGGAATGTGGTTGGAAATGGAACTATCTGGTCAAAAAATGGAAAGAAGGCGAGTC GATCACCTGCCATATTGATTCAAGTGAAGCTGACGTTGCTGTACAAGCCTTATTGAAGCTTGAACACCAACCAACAGGTG TTCTTGAGTGGATATCTGACAACATGTCTCCTGAGCTCGATAACAAGCTTAAGCAAGCGATCCGAGCTAAGCGAAAGCGT CACTTTAATGCTGAACAAGTTCACACCAAGAAAAAATCAATCGACCTTGATTATCGTGTATGGGAAAAGCTATCCCAGCG TGCGAACGAGCTAGGTTGTACGCTATCAGATGCTATTGAGTATTTGGTGAGCGAAGCATCTCGTAGTGAACAGGCCAGCA AGACAGTAACCAATCTTAAAGAAGATTTAAGCAAGCTCCTTTCTGACGATAAATAA
Upstream 100 bases:
>100_bases CTAATATAAGTATGATCTTGGTCTATTCTTTCAAGACAACAATTGTTAAATAGCCTATTTTGGGTTACGCTGTCACTAGG ATTAACTCTCGAGATTAGAC
Downstream 100 bases:
>100_bases TCATCAACAGTAGTGGTGACATTATGATGTATGTAATCTTAATCGGTGCAGCGTTGGTTTTTTGGTTAGTCGCGGTTGAT AGGCCGGTATTGAAAATCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 151; Mature: 151
Protein sequence:
>151_residues MKYQQLENLECGWKWNYLVKKWKEGESITCHIDSSEADVAVQALLKLEHQPTGVLEWISDNMSPELDNKLKQAIRAKRKR HFNAEQVHTKKKSIDLDYRVWEKLSQRANELGCTLSDAIEYLVSEASRSEQASKTVTNLKEDLSKLLSDDK
Sequences:
>Translated_151_residues MKYQQLENLECGWKWNYLVKKWKEGESITCHIDSSEADVAVQALLKLEHQPTGVLEWISDNMSPELDNKLKQAIRAKRKR HFNAEQVHTKKKSIDLDYRVWEKLSQRANELGCTLSDAIEYLVSEASRSEQASKTVTNLKEDLSKLLSDDK >Mature_151_residues MKYQQLENLECGWKWNYLVKKWKEGESITCHIDSSEADVAVQALLKLEHQPTGVLEWISDNMSPELDNKLKQAIRAKRKR HFNAEQVHTKKKSIDLDYRVWEKLSQRANELGCTLSDAIEYLVSEASRSEQASKTVTNLKEDLSKLLSDDK
Specific function: Unknown
COG id: COG3120
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0268 family
Homologues:
Organism=Escherichia coli, GI1787190, Length=150, Percent_Identity=54, Blast_Score=163, Evalue=5e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1431_VIBSL (B7VNL8)
Other databases:
- EMBL: FM954972 - RefSeq: YP_002417043.1 - GeneID: 7161003 - GenomeReviews: FM954972_GR - KEGG: vsp:VS_1431 - HOGENOM: HBG297085 - OMA: ECGWKWK - ProtClustDB: PRK05097 - HAMAP: MF_01073 - InterPro: IPR009390 - ProDom: PD033720
Pfam domain/function: PF06303 DUF1047
EC number: NA
Molecular weight: Translated: 17493; Mature: 17493
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYQQLENLECGWKWNYLVKKWKEGESITCHIDSSEADVAVQALLKLEHQPTGVLEWISD CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHC NMSPELDNKLKQAIRAKRKRHFNAEQVHTKKKSIDLDYRVWEKLSQRANELGCTLSDAIE CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH YLVSEASRSEQASKTVTNLKEDLSKLLSDDK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKYQQLENLECGWKWNYLVKKWKEGESITCHIDSSEADVAVQALLKLEHQPTGVLEWISD CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHC NMSPELDNKLKQAIRAKRKRHFNAEQVHTKKKSIDLDYRVWEKLSQRANELGCTLSDAIE CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH YLVSEASRSEQASKTVTNLKEDLSKLLSDDK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA