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The map label for this gene is yedQ [H]

Identifier: 218709381

GI number: 218709381

Start: 1515011

End: 1516999

Strand: Reverse

Name: yedQ [H]

Synonym: VS_1390

Alternate gene names: 218709381

Gene position: 1516999-1515011 (Counterclockwise)

Preceding gene: 218709382

Following gene: 218709380

Centisome position: 45.98

GC content: 40.57

Gene sequence:

>1989_bases
GTGATTCACTTCATTTTCATTGCCTTCCTGCTTTTCATCAACCTTTATTCCTTTAGCCAAGCATCAACAGCGGATCATGA
ATCTTCTCCAACAATTAGCACCTCGGTATTAGATCCCCACACAACTCCAAATGCTGATTGGAACGCACTCTATCTCTCGA
CTCTAACTCATTCCCCTTCGCGCGCATTGAACATGCTGCAAATGCGCTACACTAGCTCAACAACCTACGGGGATAAGCTC
TACCTTTCGGCACTGCTATATCAGTATATGAGCCAGCGAGAACAACCGTTTTATGGAATCGCTTCGAACGACAGTGAATA
CCAAGCAATAGAACAAGCGTTTATTAATGCCTTAGTAAATGATGGACAAGGTCAGTACAAAGAAGCTCAGCAAGGCTTTT
TGTCCATATTAGTAAAAATGCAATCAATCAACGATGTTACAGGTAGAGCATTATTAAAATACCAATTATGTCGTTCTCTC
AATGAGCAAGCAAAATATCATCAAGCGAACTATTATTGTTCTGCACTTCAGTCGGATTTGCATGACATTGCTGACCCTGT
ATTACCAAAATTTGGCACTTATCGAGTGATCGCTAACAATCACCATTTCCGCAGCGACTATCAAGCCGCACTAGATACTT
ACCTATCACTGATAAGCGTGTTCCCACAAGGACACGATATTTCGGGGATCTATAACGATGTGGGTAATTTGCTCAAAGAG
TTAAAGCAATATGATAAATCGGCAGAGTACCTCATAGAAGCACTCGCTCTGAGAGCGGATGCTTCTGATTTGATGAAAGC
ACAAGTTCATCATAGCCTTGCAGATCTTTACCTTAATCAAGGACAAAGTGACCTAGCAATTAATCACTTTCAAAAAGCAA
AAGCACTGTTGACTACATCATCTCATAGCTACGGTATTGCGCTAACAACTCTTGGTTTAGGAAAAGCATACACGCAGACG
AAGAACTATGATTTGGCGAGAGACTACTTAGTAGAGTCTCTATCGGCTTCAAGCAAGCTAAACAACGATGTCATTCGAAT
CAACGCTTTCTTGGCAATCAGCGATATGTTCGAAGACCAAAAACTTAAAACGGAAGCGCTCAATTATGCACAACAAGCTT
TGGAGCTATCCGAACAAGTCACAAGACACAAATACACAGCTCAAGCACTACTTCAACTTTCTGATATTTATCAAACTCTC
AGCGATTACAAGCAAGCTTTCTATTTCTATCAGCGATACTCATTAATACAGTTCGAAACCCGAGATATAGATAACAGATT
GGCTTTTGAAGCACTAGATCTAGCTCATGCTAGGTACGAAAAAGAATTAGAGAGTTCTTTCCTGAGACATCAAGCAAATT
TAGACCGACTTCAAATCGAAAAGATGGAACATCAAAGGATGGTGTATAACATGATTGTTATTCTATTGCTGTGTGCGGCT
AGCTTTATGATCTTCACAAACAAAGCCATTCGTGCGAAAGCAGCAATCGATGCCATGACAAAGGCGTATAGTCGCACCGA
GATAATACGAAGAGTCAAGCGTATCAAAGCCTGTAAAGGGACAGAAAAACAACATGTTCTCGTTTTACTCGATCTAGATA
AATTCAAGAAAATTAATGACCAATATGGCCACCCTACTGGTGATAGAGCGCTCGTTCATATAAGTCAGCAAATAAGACAA
CATTTAATTAAAGGTGAGCTGTTCGGGCGTTTAGGCGGCGAAGAATTTCTGATTATGCTTACTGATACAAAACCAGCTGA
AGTACAAGAGCGTGTAGAGGAGTTACATTATGCCATTTCGAGTGCGGTCTTCTTATCAGAAAACAAAAAGCCACTTAATG
TAACCGCGAGTTTTGCTTATCTAGCAACCTCAAACGCATTAAGTGACTTTGATGACTTGTACTCGGTTCTTGACCAAGCA
CTTTATCAAGCGAAGAGTAATGGCCGAAATTGCATCATCGATGCTTATAACGAACCTATTGACTCATGA

Upstream 100 bases:

>100_bases
GAGATTTACCTCACATAAAAAACCATCAACTCGCCAAAAAATTTGAAGCAATATCAAACTAACAATAGAATACCGTTCTT
TATCTGATTGATATTATCTC

Downstream 100 bases:

>100_bases
GGTTATTTATTCTCACCCTGCTTGCGAACCAATTCAGCCATAATACCTTGGCGATCACCTAGGTAATCGCTAAGGCCTAT
TTTGCGTAGTTCACACGCTG

Product: putative GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 662; Mature: 662

Protein sequence:

>662_residues
MIHFIFIAFLLFINLYSFSQASTADHESSPTISTSVLDPHTTPNADWNALYLSTLTHSPSRALNMLQMRYTSSTTYGDKL
YLSALLYQYMSQREQPFYGIASNDSEYQAIEQAFINALVNDGQGQYKEAQQGFLSILVKMQSINDVTGRALLKYQLCRSL
NEQAKYHQANYYCSALQSDLHDIADPVLPKFGTYRVIANNHHFRSDYQAALDTYLSLISVFPQGHDISGIYNDVGNLLKE
LKQYDKSAEYLIEALALRADASDLMKAQVHHSLADLYLNQGQSDLAINHFQKAKALLTTSSHSYGIALTTLGLGKAYTQT
KNYDLARDYLVESLSASSKLNNDVIRINAFLAISDMFEDQKLKTEALNYAQQALELSEQVTRHKYTAQALLQLSDIYQTL
SDYKQAFYFYQRYSLIQFETRDIDNRLAFEALDLAHARYEKELESSFLRHQANLDRLQIEKMEHQRMVYNMIVILLLCAA
SFMIFTNKAIRAKAAIDAMTKAYSRTEIIRRVKRIKACKGTEKQHVLVLLDLDKFKKINDQYGHPTGDRALVHISQQIRQ
HLIKGELFGRLGGEEFLIMLTDTKPAEVQERVEELHYAISSAVFLSENKKPLNVTASFAYLATSNALSDFDDLYSVLDQA
LYQAKSNGRNCIIDAYNEPIDS

Sequences:

>Translated_662_residues
MIHFIFIAFLLFINLYSFSQASTADHESSPTISTSVLDPHTTPNADWNALYLSTLTHSPSRALNMLQMRYTSSTTYGDKL
YLSALLYQYMSQREQPFYGIASNDSEYQAIEQAFINALVNDGQGQYKEAQQGFLSILVKMQSINDVTGRALLKYQLCRSL
NEQAKYHQANYYCSALQSDLHDIADPVLPKFGTYRVIANNHHFRSDYQAALDTYLSLISVFPQGHDISGIYNDVGNLLKE
LKQYDKSAEYLIEALALRADASDLMKAQVHHSLADLYLNQGQSDLAINHFQKAKALLTTSSHSYGIALTTLGLGKAYTQT
KNYDLARDYLVESLSASSKLNNDVIRINAFLAISDMFEDQKLKTEALNYAQQALELSEQVTRHKYTAQALLQLSDIYQTL
SDYKQAFYFYQRYSLIQFETRDIDNRLAFEALDLAHARYEKELESSFLRHQANLDRLQIEKMEHQRMVYNMIVILLLCAA
SFMIFTNKAIRAKAAIDAMTKAYSRTEIIRRVKRIKACKGTEKQHVLVLLDLDKFKKINDQYGHPTGDRALVHISQQIRQ
HLIKGELFGRLGGEEFLIMLTDTKPAEVQERVEELHYAISSAVFLSENKKPLNVTASFAYLATSNALSDFDDLYSVLDQA
LYQAKSNGRNCIIDAYNEPIDS
>Mature_662_residues
MIHFIFIAFLLFINLYSFSQASTADHESSPTISTSVLDPHTTPNADWNALYLSTLTHSPSRALNMLQMRYTSSTTYGDKL
YLSALLYQYMSQREQPFYGIASNDSEYQAIEQAFINALVNDGQGQYKEAQQGFLSILVKMQSINDVTGRALLKYQLCRSL
NEQAKYHQANYYCSALQSDLHDIADPVLPKFGTYRVIANNHHFRSDYQAALDTYLSLISVFPQGHDISGIYNDVGNLLKE
LKQYDKSAEYLIEALALRADASDLMKAQVHHSLADLYLNQGQSDLAINHFQKAKALLTTSSHSYGIALTTLGLGKAYTQT
KNYDLARDYLVESLSASSKLNNDVIRINAFLAISDMFEDQKLKTEALNYAQQALELSEQVTRHKYTAQALLQLSDIYQTL
SDYKQAFYFYQRYSLIQFETRDIDNRLAFEALDLAHARYEKELESSFLRHQANLDRLQIEKMEHQRMVYNMIVILLLCAA
SFMIFTNKAIRAKAAIDAMTKAYSRTEIIRRVKRIKACKGTEKQHVLVLLDLDKFKKINDQYGHPTGDRALVHISQQIRQ
HLIKGELFGRLGGEEFLIMLTDTKPAEVQERVEELHYAISSAVFLSENKKPLNVTASFAYLATSNALSDFDDLYSVLDQA
LYQAKSNGRNCIIDAYNEPIDS

Specific function: Involves in the regulation of cellulose production [H]

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=195, Percent_Identity=29.2307692307692, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1787262, Length=188, Percent_Identity=30.8510638297872, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=30.6748466257669, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1786584, Length=156, Percent_Identity=28.8461538461538, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=171, Percent_Identity=30.9941520467836, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081881, Length=129, Percent_Identity=34.1085271317829, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI87081974, Length=180, Percent_Identity=27.7777777777778, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=159, Percent_Identity=30.8176100628931, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788085, Length=182, Percent_Identity=27.4725274725275, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI87081977, Length=162, Percent_Identity=27.1604938271605, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 75324; Mature: 75324

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHFIFIAFLLFINLYSFSQASTADHESSPTISTSVLDPHTTPNADWNALYLSTLTHSPS
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEHHCCCHH
RALNMLQMRYTSSTTYGDKLYLSALLYQYMSQREQPFYGIASNDSEYQAIEQAFINALVN
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHC
DGQGQYKEAQQGFLSILVKMQSINDVTGRALLKYQLCRSLNEQAKYHQANYYCSALQSDL
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDIADPVLPKFGTYRVIANNHHFRSDYQAALDTYLSLISVFPQGHDISGIYNDVGNLLKE
HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LKQYDKSAEYLIEALALRADASDLMKAQVHHSLADLYLNQGQSDLAINHFQKAKALLTTS
HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEC
SHSYGIALTTLGLGKAYTQTKNYDLARDYLVESLSASSKLNNDVIRINAFLAISDMFEDQ
CCCCCEEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHEEHHHHHHHH
KLKTEALNYAQQALELSEQVTRHKYTAQALLQLSDIYQTLSDYKQAFYFYQRYSLIQFET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
RDIDNRLAFEALDLAHARYEKELESSFLRHQANLDRLQIEKMEHQRMVYNMIVILLLCAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SFMIFTNKAIRAKAAIDAMTKAYSRTEIIRRVKRIKACKGTEKQHVLVLLDLDKFKKIND
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHH
QYGHPTGDRALVHISQQIRQHLIKGELFGRLGGEEFLIMLTDTKPAEVQERVEELHYAIS
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH
SAVFLSENKKPLNVTASFAYLATSNALSDFDDLYSVLDQALYQAKSNGRNCIIDAYNEPI
HHHHCCCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
DS
CC
>Mature Secondary Structure
MIHFIFIAFLLFINLYSFSQASTADHESSPTISTSVLDPHTTPNADWNALYLSTLTHSPS
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEHHCCCHH
RALNMLQMRYTSSTTYGDKLYLSALLYQYMSQREQPFYGIASNDSEYQAIEQAFINALVN
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHC
DGQGQYKEAQQGFLSILVKMQSINDVTGRALLKYQLCRSLNEQAKYHQANYYCSALQSDL
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDIADPVLPKFGTYRVIANNHHFRSDYQAALDTYLSLISVFPQGHDISGIYNDVGNLLKE
HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LKQYDKSAEYLIEALALRADASDLMKAQVHHSLADLYLNQGQSDLAINHFQKAKALLTTS
HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEC
SHSYGIALTTLGLGKAYTQTKNYDLARDYLVESLSASSKLNNDVIRINAFLAISDMFEDQ
CCCCCEEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHEEHHHHHHHH
KLKTEALNYAQQALELSEQVTRHKYTAQALLQLSDIYQTLSDYKQAFYFYQRYSLIQFET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
RDIDNRLAFEALDLAHARYEKELESSFLRHQANLDRLQIEKMEHQRMVYNMIVILLLCAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SFMIFTNKAIRAKAAIDAMTKAYSRTEIIRRVKRIKACKGTEKQHVLVLLDLDKFKKIND
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHH
QYGHPTGDRALVHISQQIRQHLIKGELFGRLGGEEFLIMLTDTKPAEVQERVEELHYAIS
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH
SAVFLSENKKPLNVTASFAYLATSNALSDFDDLYSVLDQALYQAKSNGRNCIIDAYNEPI
HHHHCCCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
DS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA