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The map label for this gene is rpfG [H]

Identifier: 218709298

GI number: 218709298

Start: 1406613

End: 1407773

Strand: Reverse

Name: rpfG [H]

Synonym: VS_1307

Alternate gene names: 218709298

Gene position: 1407773-1406613 (Counterclockwise)

Preceding gene: 218709300

Following gene: 218709292

Centisome position: 42.67

GC content: 43.58

Gene sequence:

>1161_bases
TTGGCTTTGACCATGTTTGACTACTCCCAAATCAGCAGAGTAGCCGCCCAAGATAAAGACATTATCGCTATCGTTGATGA
TCTCTTTCGGCTAGCTCGCGAACATTACCCCATTCTATCTAGGCTTTCGGTCGTGCTGTGCAATGAAAATAGAGCATCGA
ATTATTTTGTTTCGGATACTCTGTGCCAAGAAGCTGAGCATCGCTACATCGAGCAAGAACTAAAGCCAGAATCAGCTTTA
TCTAGAATGGCTGAGTCTTTAGATACTCGAATCATCCACGACCTCACCACCATTAGCCCAACCAAACAAATATCTCACTT
GCTCGATATCGGTCATCAAAGCAGTTACACAACACCTATTCATCATCAAGAAAGTAATCTTGGGTTTGTGTTTATCAATG
CTTCATCAACGGGGTTCTTTGCTAACCAAACCATCCAGTGTGATATCGCCTATCTCACTCAAGTCATCTCTAGCCTTTTC
GTTCAGTGGTTTGAGCGCCAGCGTCACTTTCAATCTTCTTTAGCGATCGCTTTAAATATGGGTCATGCTCGAGATCCAGA
AACCAAAGAACACCTAATTCGCATGGGTAAATACAGTGAACAAATTGCTCGAACTCTGTCGCACACCAAAAGAGAAATTA
CACACCAATTCATTCATCGAATTCGGTTGTATGCGCCCTTCCACGACATAGGTAAATATCGAATTCCAGATAAAGTGTTA
TTCAGTAGCGCGCGTTTCAATGAAGAAGAAAGAAACATCATGAACAATCACACTTTGTATGGCGAAGAGATGATTGATGA
CGTGGTTGCCCTTTCCCACCACAGCTCGATGTGCAGTGAAGAGATTCAATTCATTAAGAATATTGTGCGCCACCATCATG
AACGGTTTGATGGCTCTGGATTGCCTGATGCTTTGAGTAACACAGCGATACCACTCGAAGCTCGAATAGTGACATTAGCC
GATGTATTCGATGCGCTGATGAGCAAAAGAGCTTATAAGCACGCGTGGTCACTCGATGAAGTGATGGAATACATAGAAGC
GCAGAACGGTTCAATGTTCGACCCAGAGTGTGTCGTGGCTCTTAAACAGAACCTAGACGGCTTTATGGCAATTCGGGAGC
AATACAATGACGATGCTCAGCCGCATTTAATGACAGCTTAA

Upstream 100 bases:

>100_bases
AGAACGCAGTGTTGCTAATTAACAGCGAGGTGCTATGTTAGAAGTGGTATGGAAACCTACTAATAATGATATTAAACAAT
GATATAACTATAAATAAAGG

Downstream 100 bases:

>100_bases
ACTATGGCACCTTTGTTATTCAGGCCTAAGTAAGAGAACGCGAACCAACAAAAAAGGATGCCAATTGGCATCCTTTTGTT
TTCTAGTTTTCAGCTGAAAG

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MALTMFDYSQISRVAAQDKDIIAIVDDLFRLAREHYPILSRLSVVLCNENRASNYFVSDTLCQEAEHRYIEQELKPESAL
SRMAESLDTRIIHDLTTISPTKQISHLLDIGHQSSYTTPIHHQESNLGFVFINASSTGFFANQTIQCDIAYLTQVISSLF
VQWFERQRHFQSSLAIALNMGHARDPETKEHLIRMGKYSEQIARTLSHTKREITHQFIHRIRLYAPFHDIGKYRIPDKVL
FSSARFNEEERNIMNNHTLYGEEMIDDVVALSHHSSMCSEEIQFIKNIVRHHHERFDGSGLPDALSNTAIPLEARIVTLA
DVFDALMSKRAYKHAWSLDEVMEYIEAQNGSMFDPECVVALKQNLDGFMAIREQYNDDAQPHLMTA

Sequences:

>Translated_386_residues
MALTMFDYSQISRVAAQDKDIIAIVDDLFRLAREHYPILSRLSVVLCNENRASNYFVSDTLCQEAEHRYIEQELKPESAL
SRMAESLDTRIIHDLTTISPTKQISHLLDIGHQSSYTTPIHHQESNLGFVFINASSTGFFANQTIQCDIAYLTQVISSLF
VQWFERQRHFQSSLAIALNMGHARDPETKEHLIRMGKYSEQIARTLSHTKREITHQFIHRIRLYAPFHDIGKYRIPDKVL
FSSARFNEEERNIMNNHTLYGEEMIDDVVALSHHSSMCSEEIQFIKNIVRHHHERFDGSGLPDALSNTAIPLEARIVTLA
DVFDALMSKRAYKHAWSLDEVMEYIEAQNGSMFDPECVVALKQNLDGFMAIREQYNDDAQPHLMTA
>Mature_385_residues
ALTMFDYSQISRVAAQDKDIIAIVDDLFRLAREHYPILSRLSVVLCNENRASNYFVSDTLCQEAEHRYIEQELKPESALS
RMAESLDTRIIHDLTTISPTKQISHLLDIGHQSSYTTPIHHQESNLGFVFINASSTGFFANQTIQCDIAYLTQVISSLFV
QWFERQRHFQSSLAIALNMGHARDPETKEHLIRMGKYSEQIARTLSHTKREITHQFIHRIRLYAPFHDIGKYRIPDKVLF
SSARFNEEERNIMNNHTLYGEEMIDDVVALSHHSSMCSEEIQFIKNIVRHHHERFDGSGLPDALSNTAIPLEARIVTLAD
VFDALMSKRAYKHAWSLDEVMEYIEAQNGSMFDPECVVALKQNLDGFMAIREQYNDDAQPHLMTA

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG3437

COG function: function code KT; Response regulator containing a CheY-like receiver domain and an HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 44447; Mature: 44316

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTMFDYSQISRVAAQDKDIIAIVDDLFRLAREHYPILSRLSVVLCNENRASNYFVSDT
CEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCCCEEHHHH
LCQEAEHRYIEQELKPESALSRMAESLDTRIIHDLTTISPTKQISHLLDIGHQSSYTTPI
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC
HHQESNLGFVFINASSTGFFANQTIQCDIAYLTQVISSLFVQWFERQRHFQSSLAIALNM
CCCCCCCEEEEEECCCCCEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
GHARDPETKEHLIRMGKYSEQIARTLSHTKREITHQFIHRIRLYAPFHDIGKYRIPDKVL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHH
FSSARFNEEERNIMNNHTLYGEEMIDDVVALSHHSSMCSEEIQFIKNIVRHHHERFDGSG
HHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPDALSNTAIPLEARIVTLADVFDALMSKRAYKHAWSLDEVMEYIEAQNGSMFDPECVVA
CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHH
LKQNLDGFMAIREQYNDDAQPHLMTA
HHHCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ALTMFDYSQISRVAAQDKDIIAIVDDLFRLAREHYPILSRLSVVLCNENRASNYFVSDT
EEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCCCEEHHHH
LCQEAEHRYIEQELKPESALSRMAESLDTRIIHDLTTISPTKQISHLLDIGHQSSYTTPI
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC
HHQESNLGFVFINASSTGFFANQTIQCDIAYLTQVISSLFVQWFERQRHFQSSLAIALNM
CCCCCCCEEEEEECCCCCEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
GHARDPETKEHLIRMGKYSEQIARTLSHTKREITHQFIHRIRLYAPFHDIGKYRIPDKVL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHH
FSSARFNEEERNIMNNHTLYGEEMIDDVVALSHHSSMCSEEIQFIKNIVRHHHERFDGSG
HHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LPDALSNTAIPLEARIVTLADVFDALMSKRAYKHAWSLDEVMEYIEAQNGSMFDPECVVA
CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHH
LKQNLDGFMAIREQYNDDAQPHLMTA
HHHCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]