| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709276
Identifier: 218709276
GI number: 218709276
Start: 1379982
End: 1380977
Strand: Reverse
Name: 218709276
Synonym: VS_1283
Alternate gene names: NA
Gene position: 1380977-1379982 (Counterclockwise)
Preceding gene: 218709282
Following gene: 218709275
Centisome position: 41.86
GC content: 40.96
Gene sequence:
>996_bases TTGGGATATCAGAACAACATGAATACAGAATTTAATTTTACAATTAAGAGCATTAGCCTCGACGAGAACTATCAACCTGC GGACAGCACACGTATCACCACCAACTTCGCTAACTTGGCGCGTGGTGACAGCCGCCAAGCAAACTTGCGCAATGCACTGC AGATGATTGACAACAGTTTCAACGCATTAGCACACTGGGACAACCCAAAGGGCGACCGTTACTCTGTAGAGCTTGAAATC ATTTCTGTTGATATGGACATTGAAAGCAACGGCGAAGCATTCCCTTCCATTGAAGTACTGAAAACCAATATTCTAGACCG TAAAACCAACGAGCGTATTGAAGGCATTATCGGAAATAACTTCTCTTCTTATGTTCGAGATTATGACTTTAGCGTACGTC TATTGGATCATAATAAAGGCCAAGAGAAATTCAGCATTCCAGAAGATTTTGGGGATTTACACGGCAAGCTTTTTAAATAT TTCGTTAACTCTGACGCTTACAAAAAGAACTTTAATAAACCACCTGTTATTTGCTTAAGCGTGTCAGATAATAAAACCTA TTACCGAACCGAGAACCAACATCCAGTATTAGGTTTTGAATACCAACCGAATGAGTCTTCTTTAACTGAACAATATTTTA AGAAGATGGGGTTACAGGTTCGTTACTTCATGCCGCCAAACAGTGTTGCACCTCTAGCTTTCTATTTCTTTGGTGATCTA CTGAACGATTACTCAAACCTAGAGCTTATCAGCACCATCAGCACCATGGGTACATTCCAAAAAATCTACCGTCCTGAGAT TTACAACGCGAATGCGGTTGCAGGTAACTGCTACCAACCAAACTTGAAAAACTTGGATCACTCGCTAACTCAAATCGTGT ATGACCGAGAAGAACGAAGCAAATTAGCTATCGAACAAGGTAAATTCGCAGAAGAGACTTTCATTAAGCCATACCAGTCA GTTCTAGAGAACTGGTCTGCCAACTACGCGCTTTAA
Upstream 100 bases:
>100_bases ATTAATTTTTTCATACAGTATTGCCTTCAACTATTAATCCGGTCACAAGCAAAAATAAATGCAATTTTAATTCTAAAGAC CGAGAAAGTCAGACTACAGA
Downstream 100 bases:
>100_bases TCGAGCAATTGCGCTCTTAAATCACCAAGGATAGGCAGTATACGTTATGAAAACATTATTACCGACTTCAACAGCAGGCA GCTTACCTAAGCCATCTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MGYQNNMNTEFNFTIKSISLDENYQPADSTRITTNFANLARGDSRQANLRNALQMIDNSFNALAHWDNPKGDRYSVELEI ISVDMDIESNGEAFPSIEVLKTNILDRKTNERIEGIIGNNFSSYVRDYDFSVRLLDHNKGQEKFSIPEDFGDLHGKLFKY FVNSDAYKKNFNKPPVICLSVSDNKTYYRTENQHPVLGFEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDL LNDYSNLELISTISTMGTFQKIYRPEIYNANAVAGNCYQPNLKNLDHSLTQIVYDREERSKLAIEQGKFAEETFIKPYQS VLENWSANYAL
Sequences:
>Translated_331_residues MGYQNNMNTEFNFTIKSISLDENYQPADSTRITTNFANLARGDSRQANLRNALQMIDNSFNALAHWDNPKGDRYSVELEI ISVDMDIESNGEAFPSIEVLKTNILDRKTNERIEGIIGNNFSSYVRDYDFSVRLLDHNKGQEKFSIPEDFGDLHGKLFKY FVNSDAYKKNFNKPPVICLSVSDNKTYYRTENQHPVLGFEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDL LNDYSNLELISTISTMGTFQKIYRPEIYNANAVAGNCYQPNLKNLDHSLTQIVYDREERSKLAIEQGKFAEETFIKPYQS VLENWSANYAL >Mature_330_residues GYQNNMNTEFNFTIKSISLDENYQPADSTRITTNFANLARGDSRQANLRNALQMIDNSFNALAHWDNPKGDRYSVELEII SVDMDIESNGEAFPSIEVLKTNILDRKTNERIEGIIGNNFSSYVRDYDFSVRLLDHNKGQEKFSIPEDFGDLHGKLFKYF VNSDAYKKNFNKPPVICLSVSDNKTYYRTENQHPVLGFEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDLL NDYSNLELISTISTMGTFQKIYRPEIYNANAVAGNCYQPNLKNLDHSLTQIVYDREERSKLAIEQGKFAEETFIKPYQSV LENWSANYAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38217; Mature: 38086
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGYQNNMNTEFNFTIKSISLDENYQPADSTRITTNFANLARGDSRQANLRNALQMIDNSF CCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEECHHHHHCCCCCHHHHHHHHHHHHCCC NALAHWDNPKGDRYSVELEIISVDMDIESNGEAFPSIEVLKTNILDRKTNERIEGIIGNN CEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHEEECCC FSSYVRDYDFSVRLLDHNKGQEKFSIPEDFGDLHGKLFKYFVNSDAYKKNFNKPPVICLS HHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEE VSDNKTYYRTENQHPVLGFEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDL ECCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH LNDYSNLELISTISTMGTFQKIYRPEIYNANAVAGNCYQPNLKNLDHSLTQIVYDREERS HCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHH KLAIEQGKFAEETFIKPYQSVLENWSANYAL HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure GYQNNMNTEFNFTIKSISLDENYQPADSTRITTNFANLARGDSRQANLRNALQMIDNSF CCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEECHHHHHCCCCCHHHHHHHHHHHHCCC NALAHWDNPKGDRYSVELEIISVDMDIESNGEAFPSIEVLKTNILDRKTNERIEGIIGNN CEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHEEECCC FSSYVRDYDFSVRLLDHNKGQEKFSIPEDFGDLHGKLFKYFVNSDAYKKNFNKPPVICLS HHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEE VSDNKTYYRTENQHPVLGFEYQPNESSLTEQYFKKMGLQVRYFMPPNSVAPLAFYFFGDL ECCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH LNDYSNLELISTISTMGTFQKIYRPEIYNANAVAGNCYQPNLKNLDHSLTQIVYDREERS HCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHH KLAIEQGKFAEETFIKPYQSVLENWSANYAL HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA