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The map label for this gene is ydhE [C]

Identifier: 218709242

GI number: 218709242

Start: 1344636

End: 1346003

Strand: Reverse

Name: ydhE [C]

Synonym: VS_1249

Alternate gene names: 218709242

Gene position: 1346003-1344636 (Counterclockwise)

Preceding gene: 218709243

Following gene: 218709237

Centisome position: 40.8

GC content: 43.57

Gene sequence:

>1368_bases
GTGTTGTTTGTGTCTACACAATCGTATGTAAGGAAAAATTTCTCTCTCGCCTGGCCCCTAGCCCTAAACGGTATATTGAT
GCAGTCGATGTTGATGATCGATACGCTGCTGGTCTCTCCTCTTGGTGAAATACCTTTGGCTGCCATGGGAATTGCGACGA
CTATGGTTGCCTTTGTACTCGGTATTCAAATGGCGCTGGCAAACGGCACTCAACTAGTATTAAGCCGCGCCGTAGGTTCT
GGCATCACCGCTTCATTATCCAAAGCGTTTTGGGCAGGTCTGTTCATCAACTTAGGTATCGCGACAATATTTTGGTTTCT
ACTCACCTTTTTAGAACAGCCTTTAATTCAAGCCTTAACCGACGATAAAGCCCTTTACTTAGAAATCAGCCACTACCTTG
ATATCTCAAAGTATCTCGTCATTTTCACTGCATTAACGCAAGTGATTATCGCCCTATTTAACGCATTAGGAAGAACCAAG
ATACCGTTTAAAGGGTATTTGATTGAATTGCCGATCAACGCTGTACTTTCTTATGGGCTCATTCACGGCTTTTCAAATTT
CGAAGGTATTGGTGTTCAAGGCGCCGCGCTAGGCAGTGTTATTGCTATCACCCTTCGCCTTGTGTATCTGGTTCTTTGCG
TGTATTTCAGCTCAGCAATTTCACTCAAATTAGACGCCCAACGATCAGAGTTCATGACAAACGTTCGCCGTCACTTTATC
GAGATATTCCCTGTCGCAGCAAATGTAACCATGCTGTTGATTGGCGCAACGATTTATCAGTTACTGTATTCGCAACTTAA
CATCAACGCGTATGTTGCGATTACTTTGGTGATGCCTTGGATTAGGGCTGTCTCTCAATTTATTACCGCTTGGGCTCACT
CTTCCGCAATTACTATCAGCCAAGCGATTGGCTCTAAAAAGATGGATGACCTAGTCAAAAACGTCGATACCAGCATTGAT
ATTGCGGTAGTCATTTCTTTTGTGTGTGCAATCTTGTTCGCAGGCTTAAGTATGGTGATTGGTGACATTTACCCGAACTT
GGACGAGTCTACATATCAAGCGTTGGCCGTTATCGCCCCACTCTACATCTTTTTACCTATTGTTCGTGGCTACAACACAG
TCCATGGAAATGTATTGAGAGCACTAGGAAAAACAACCGCAGTCTTCAAAATCAACTTTACTGGTCAATGGGTAATTTCA
ATTCCATTGTGTGCATTGATCATCTTTGGATTAGACGGCTCTATCTTTTGGGCATTTGCCATTCAGCCCTTTGAAGAGCT
AGTAAAAGCGCTGCCCTTCAGACATCTTGCTCGCAAGTCATTGAGAGAGTTCGACTCAAACAAAGCCAACGAATTGATGT
ATGACTGA

Upstream 100 bases:

>100_bases
AGTTTTAGCGCCCATTTTTAACCATCCATTACCGTAGTGTTTCATCTTTAAATGTTGAACTCGGATCCTCTCAGAGAAAA
CTTACGGTTACACACATAAG

Downstream 100 bases:

>100_bases
TCGCCACCAAAAAGTAACAAAGTTACTGTCCCGAGAAAATGTCTGAACTGCTTGTGTAGTCTCAGGCTTATCTCATTTAG
ATCGATATAGCTCAAACGAA

Product: putative multidrug resistance protein norM

Products: Proton [Cytoplasm]; multidrug [Periplasm] [C]

Alternate protein names: Na+ Driven Multidrug Efflux Pump; Mate Efflux Family Protein; Na+-Driven Multidrug Efflux Pump; Adhesin; DNA Damage-Inducible Protein; MATE Efflux Family Protein Subfamily; Multidrug ABC Transporter; Cation Efflux Pump; Multidrug Efflux Protein; Multi Antimicrobial Extrusion Protein MatE; Damage-Inducible Protein; MATE Family Multidrug Efflux Pumps; Multidrug Efflux Pump; Multidrug Resistance Protein NorM

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MLFVSTQSYVRKNFSLAWPLALNGILMQSMLMIDTLLVSPLGEIPLAAMGIATTMVAFVLGIQMALANGTQLVLSRAVGS
GITASLSKAFWAGLFINLGIATIFWFLLTFLEQPLIQALTDDKALYLEISHYLDISKYLVIFTALTQVIIALFNALGRTK
IPFKGYLIELPINAVLSYGLIHGFSNFEGIGVQGAALGSVIAITLRLVYLVLCVYFSSAISLKLDAQRSEFMTNVRRHFI
EIFPVAANVTMLLIGATIYQLLYSQLNINAYVAITLVMPWIRAVSQFITAWAHSSAITISQAIGSKKMDDLVKNVDTSID
IAVVISFVCAILFAGLSMVIGDIYPNLDESTYQALAVIAPLYIFLPIVRGYNTVHGNVLRALGKTTAVFKINFTGQWVIS
IPLCALIIFGLDGSIFWAFAIQPFEELVKALPFRHLARKSLREFDSNKANELMYD

Sequences:

>Translated_455_residues
MLFVSTQSYVRKNFSLAWPLALNGILMQSMLMIDTLLVSPLGEIPLAAMGIATTMVAFVLGIQMALANGTQLVLSRAVGS
GITASLSKAFWAGLFINLGIATIFWFLLTFLEQPLIQALTDDKALYLEISHYLDISKYLVIFTALTQVIIALFNALGRTK
IPFKGYLIELPINAVLSYGLIHGFSNFEGIGVQGAALGSVIAITLRLVYLVLCVYFSSAISLKLDAQRSEFMTNVRRHFI
EIFPVAANVTMLLIGATIYQLLYSQLNINAYVAITLVMPWIRAVSQFITAWAHSSAITISQAIGSKKMDDLVKNVDTSID
IAVVISFVCAILFAGLSMVIGDIYPNLDESTYQALAVIAPLYIFLPIVRGYNTVHGNVLRALGKTTAVFKINFTGQWVIS
IPLCALIIFGLDGSIFWAFAIQPFEELVKALPFRHLARKSLREFDSNKANELMYD
>Mature_455_residues
MLFVSTQSYVRKNFSLAWPLALNGILMQSMLMIDTLLVSPLGEIPLAAMGIATTMVAFVLGIQMALANGTQLVLSRAVGS
GITASLSKAFWAGLFINLGIATIFWFLLTFLEQPLIQALTDDKALYLEISHYLDISKYLVIFTALTQVIIALFNALGRTK
IPFKGYLIELPINAVLSYGLIHGFSNFEGIGVQGAALGSVIAITLRLVYLVLCVYFSSAISLKLDAQRSEFMTNVRRHFI
EIFPVAANVTMLLIGATIYQLLYSQLNINAYVAITLVMPWIRAVSQFITAWAHSSAITISQAIGSKKMDDLVKNVDTSID
IAVVISFVCAILFAGLSMVIGDIYPNLDESTYQALAVIAPLYIFLPIVRGYNTVHGNVLRALGKTTAVFKINFTGQWVIS
IPLCALIIFGLDGSIFWAFAIQPFEELVKALPFRHLARKSLREFDSNKANELMYD

Specific function: Unknown

COG id: COG0534

COG function: function code V; Na+-driven multidrug efflux pump

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50040; Mature: 50040

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFVSTQSYVRKNFSLAWPLALNGILMQSMLMIDTLLVSPLGEIPLAAMGIATTMVAFVL
CEEECCHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
GIQMALANGTQLVLSRAVGSGITASLSKAFWAGLFINLGIATIFWFLLTFLEQPLIQALT
HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DDKALYLEISHYLDISKYLVIFTALTQVIIALFNALGRTKIPFKGYLIELPINAVLSYGL
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHH
IHGFSNFEGIGVQGAALGSVIAITLRLVYLVLCVYFSSAISLKLDAQRSEFMTNVRRHFI
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHH
EIFPVAANVTMLLIGATIYQLLYSQLNINAYVAITLVMPWIRAVSQFITAWAHSSAITIS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHH
QAIGSKKMDDLVKNVDTSIDIAVVISFVCAILFAGLSMVIGDIYPNLDESTYQALAVIAP
HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LYIFLPIVRGYNTVHGNVLRALGKTTAVFKINFTGQWVISIPLCALIIFGLDGSIFWAFA
HHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEHH
IQPFEELVKALPFRHLARKSLREFDSNKANELMYD
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLFVSTQSYVRKNFSLAWPLALNGILMQSMLMIDTLLVSPLGEIPLAAMGIATTMVAFVL
CEEECCHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
GIQMALANGTQLVLSRAVGSGITASLSKAFWAGLFINLGIATIFWFLLTFLEQPLIQALT
HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DDKALYLEISHYLDISKYLVIFTALTQVIIALFNALGRTKIPFKGYLIELPINAVLSYGL
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHH
IHGFSNFEGIGVQGAALGSVIAITLRLVYLVLCVYFSSAISLKLDAQRSEFMTNVRRHFI
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHH
EIFPVAANVTMLLIGATIYQLLYSQLNINAYVAITLVMPWIRAVSQFITAWAHSSAITIS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHH
QAIGSKKMDDLVKNVDTSIDIAVVISFVCAILFAGLSMVIGDIYPNLDESTYQALAVIAP
HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LYIFLPIVRGYNTVHGNVLRALGKTTAVFKINFTGQWVISIPLCALIIFGLDGSIFWAFA
HHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEHH
IQPFEELVKALPFRHLARKSLREFDSNKANELMYD
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; multidrug [Cytoplasm] [C]

Specific reaction: Proton [Periplasm] + multidrug [Cytoplasm] = Proton [Cytoplasm] + multidrug [Periplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA