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The map label for this gene is kdgF [H]

Identifier: 218709237

GI number: 218709237

Start: 1337029

End: 1337364

Strand: Reverse

Name: kdgF [H]

Synonym: VS_1244

Alternate gene names: 218709237

Gene position: 1337364-1337029 (Counterclockwise)

Preceding gene: 218709242

Following gene: 218709236

Centisome position: 40.53

GC content: 43.75

Gene sequence:

>336_bases
ATGAACTCTTTCTTTATTCTAGATGAAAACCCATGGGAAGAATTGGGTGGTGGTATCAAGCGTAAAATCGTCGCGTACAC
TGACGATCTTATGGCTGTACACCTATGTTTTGATAAGGGCGCAATTGGCCATCCTCATACTCACGAAATTCACGACCAAA
TCGGTTATGTTGTTCGTGGTAGCTTCGAAGCTGAAATCGAAGGTGAAAAGAAAGTGCTTAAAGAAGGCGATGCTTACTTC
GCGCGTAAACACATGATGCACGGCGCCGTTGCTCTAGAGCAAGACAGCATCCTTCTTGATATCTTCAATCCTGCGCGTGA
AGATTTCCTAAAATAA

Upstream 100 bases:

>100_bases
ACACAACTCTAGATATATTGTATTACAATTAACCTCATTCCCTTATGATGAACACAGTTAAGTAACACTTAAAAGATTTA
AACAGATTAGGAGATACACA

Downstream 100 bases:

>100_bases
TAACTAGCGCAACCTCAGTTGCTAAGGTAAGCATATGAAATCATTAAACATCGCGGTCATTGGCGAGTGCATGGTTGAGC
TACAACAGAAACAAGACGGG

Product: pectin degradation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MNSFFILDENPWEELGGGIKRKIVAYTDDLMAVHLCFDKGAIGHPHTHEIHDQIGYVVRGSFEAEIEGEKKVLKEGDAYF
ARKHMMHGAVALEQDSILLDIFNPAREDFLK

Sequences:

>Translated_111_residues
MNSFFILDENPWEELGGGIKRKIVAYTDDLMAVHLCFDKGAIGHPHTHEIHDQIGYVVRGSFEAEIEGEKKVLKEGDAYF
ARKHMMHGAVALEQDSILLDIFNPAREDFLK
>Mature_111_residues
MNSFFILDENPWEELGGGIKRKIVAYTDDLMAVHLCFDKGAIGHPHTHEIHDQIGYVVRGSFEAEIEGEKKVLKEGDAYF
ARKHMMHGAVALEQDSILLDIFNPAREDFLK

Specific function: May have a role in pathogenicity [H]

COG id: COG1917

COG function: function code S; Uncharacterized conserved protein, contains double-stranded beta-helix domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2 [H]

EC number: NA

Molecular weight: Translated: 12614; Mature: 12614

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSFFILDENPWEELGGGIKRKIVAYTDDLMAVHLCFDKGAIGHPHTHEIHDQIGYVVRG
CCCEEEEECCCHHHHCCHHHEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHCCEEEEC
SFEAEIEGEKKVLKEGDAYFARKHMMHGAVALEQDSILLDIFNPAREDFLK
CCCEEECCHHHHHHCCCHHHHHHHHHHCCEEECCCCEEEEECCCCHHHHCC
>Mature Secondary Structure
MNSFFILDENPWEELGGGIKRKIVAYTDDLMAVHLCFDKGAIGHPHTHEIHDQIGYVVRG
CCCEEEEECCCHHHHCCHHHEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHCCEEEEC
SFEAEIEGEKKVLKEGDAYFARKHMMHGAVALEQDSILLDIFNPAREDFLK
CCCEEECCHHHHHHCCCHHHHHHHHHHCCEEECCCCEEEEECCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1766386 [H]