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The map label for this gene is yiaD [H]

Identifier: 218709202

GI number: 218709202

Start: 1282834

End: 1283502

Strand: Reverse

Name: yiaD [H]

Synonym: VS_1209

Alternate gene names: 218709202

Gene position: 1283502-1282834 (Counterclockwise)

Preceding gene: 218709203

Following gene: 218709201

Centisome position: 38.9

GC content: 50.97

Gene sequence:

>669_bases
TTGAAAAAAATCACACTAGCCCTGGCACTCACTGTTGCTCTAACGGGCTGTCAAGCGACACAACGCCAAAACGCTACAAC
CGGCGAATCTGAAACTAATTCCGCAACTCAAGGCGCTTTAATTGGTGCAATCGCCGGTGCTGTTGCTGGTGCTGCTACGG
GTGACGACTCTAAAGACCGTCGTAAGCGTGCACTTATCGGCGCAGCAGGTGGCGCAGCAGTTGGCGGTGGTATCGGTTAC
TACTTTGACCAGCAAGAAGCTGCACTTCGTGAAGAACTCATGAACTCAGGCGTTCAAGTAGAGCGTGTTGGTGAGAACCA
ACTTCTACTTCGCCTAGAGAACGGCATTGGCTTCGATTCTGGTTCTTACGCTTTAGAATCAAGCATCCACAAAACACTTC
GCGGCGTTGCGCGCATCTTAGTTGAATACCCAGACACTAGCCTAGTGATCGAAGGTCACACTGACAGCACAGGCAGCGAG
TCTTCTAACCAAGTTCTTTCTGAGCGTCGTGCTGAATCGGTTCGTGCATTCTTGATCTCTCAAGACGTTGCTGCAGGCCG
TGCCATTGCTCGAGGTAACGGTGAGCGTTACCCTCTATGTGACAACAACACCTCTCAAGGTCGCGCTTGTAACCGTCGCG
TAGAAATTCAAATCTTGCCGCTTAAGTAG

Upstream 100 bases:

>100_bases
CTTTACATTGCTTCAGCGTATTGATAAAAACCACCAATAGGACTTATTGTTGTCTTTCGTAATTCATGCGTTTGACAGAA
GTACATGATGGAGAAATACG

Downstream 100 bases:

>100_bases
CACGATTAAAGCCCAGTTCGTCTTTATCTATTGAATTAACCTCTATATAGTTGCTTATCGTAGTGTTGCTTGTTCAAAGT
CACACGACTAGCCATATTCA

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKKITLALALTVALTGCQATQRQNATTGESETNSATQGALIGAIAGAVAGAATGDDSKDRRKRALIGAAGGAAVGGGIGY
YFDQQEAALREELMNSGVQVERVGENQLLLRLENGIGFDSGSYALESSIHKTLRGVARILVEYPDTSLVIEGHTDSTGSE
SSNQVLSERRAESVRAFLISQDVAAGRAIARGNGERYPLCDNNTSQGRACNRRVEIQILPLK

Sequences:

>Translated_222_residues
MKKITLALALTVALTGCQATQRQNATTGESETNSATQGALIGAIAGAVAGAATGDDSKDRRKRALIGAAGGAAVGGGIGY
YFDQQEAALREELMNSGVQVERVGENQLLLRLENGIGFDSGSYALESSIHKTLRGVARILVEYPDTSLVIEGHTDSTGSE
SSNQVLSERRAESVRAFLISQDVAAGRAIARGNGERYPLCDNNTSQGRACNRRVEIQILPLK
>Mature_222_residues
MKKITLALALTVALTGCQATQRQNATTGESETNSATQGALIGAIAGAVAGAATGDDSKDRRKRALIGAAGGAAVGGGIGY
YFDQQEAALREELMNSGVQVERVGENQLLLRLENGIGFDSGSYALESSIHKTLRGVARILVEYPDTSLVIEGHTDSTGSE
SSNQVLSERRAESVRAFLISQDVAAGRAIARGNGERYPLCDNNTSQGRACNRRVEIQILPLK

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=225, Percent_Identity=45.3333333333333, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1787191, Length=87, Percent_Identity=43.6781609195402, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23350; Mature: 23350

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKITLALALTVALTGCQATQRQNATTGESETNSATQGALIGAIAGAVAGAATGDDSKDR
CCEEHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
RKRALIGAAGGAAVGGGIGYYFDQQEAALREELMNSGVQVERVGENQLLLRLENGIGFDS
HHHHHEECCCCCCCCCCCCEEECCHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCC
GSYALESSIHKTLRGVARILVEYPDTSLVIEGHTDSTGSESSNQVLSERRAESVRAFLIS
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QDVAAGRAIARGNGERYPLCDNNTSQGRACNRRVEIQILPLK
HHHHHCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MKKITLALALTVALTGCQATQRQNATTGESETNSATQGALIGAIAGAVAGAATGDDSKDR
CCEEHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
RKRALIGAAGGAAVGGGIGYYFDQQEAALREELMNSGVQVERVGENQLLLRLENGIGFDS
HHHHHEECCCCCCCCCCCCEEECCHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCC
GSYALESSIHKTLRGVARILVEYPDTSLVIEGHTDSTGSESSNQVLSERRAESVRAFLIS
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QDVAAGRAIARGNGERYPLCDNNTSQGRACNRRVEIQILPLK
HHHHHCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]