| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709147
Identifier: 218709147
GI number: 218709147
Start: 1221674
End: 1223041
Strand: Reverse
Name: 218709147
Synonym: VS_1154
Alternate gene names: NA
Gene position: 1223041-1221674 (Counterclockwise)
Preceding gene: 218709154
Following gene: 218709144
Centisome position: 37.07
GC content: 39.04
Gene sequence:
>1368_bases ATGAAAAAAACAGTTTTAGCTTCAACCATTTGTATAGGCTTGCTCTCTTCATCTATCGCTAACGCCAACTATAACGGTGC TCATGAGGTAGGTCAGAACATGCGTAGTAGCATAGATGAGATGATTACAACTAAGCTTAAAGCGTCATTTTTTGACTCAG CTGCACTATATATGGATGCGACAAATGCTACGCAACTAAAAACATCACCAAGTGGATTGCTAACATCTTTAGTTACAGGA TCTCAAAATACTCAACTTCCATTGGAAACAAGGCAAGAACTGATTGACGCTTCTCAAGAAGTTGGTTTTGTGGTCGACTA TTTGAAGAAAAACCCTAAAACAAAAGGTGTCGATAAAGAGGTAATGGATTTCTGTATTGCAGAAAACATAGAAGCGAAAA ACTGGCCGGGTATTGATTATGTTGTCGATCAATACGGCACAAAAAATGGTATCACAACGCTCCCCGTATCAATTATCTAT TTCGCATCTAAGGGCAATTGCCAAGATCCAAATGACTGGGCAGTGAAATTAAGTAAGAGCACAACGAAATCAGAGTTTGA ATCTTCTATCCCTTCCGAAGTGATTGCTTACAGCTCTAATGTAGGTAATACCGGTGGTGAACTGGTCTACATTCTTGAAA ACAGTTATAATTTCAGTGACGAGCCCGAAGAGCAATTTGAGTCTTTTACTTTCTATCAGGAATCAAGTGATGACACTCCT GGGACTGGTCTATTTAGACGAACTCAAGTTATGAAAAACTCGATAGATCCTAACCAAGCGTATTCAAAGTTTACGAATGT AGTATGCAAGGATTGTAATAGTGATAACGAGAAATTTAAGGTTGAAAGTCGCTCTGAATTCGGCAGTAATCAAGTATCAC TTGCTTCGAGTGCTGTTGTATCCGGTGGTAAGCTAATTCCAGGCTTTGTGAGCGAAACATCCACCGAAGCTGAATATTTT GTTCAAGTAAACTTGGACCCTGCGACCCCAAATGTTGCAACCTCATTGTTCATTGATGCGTTTAAATTCGAAGACTCTTT GGTTCATGGTCGTTATTACTATGATGGGAATAGTGGCGTTAAATTCAACGCAGAACAGCTAAAAGCAACAAACCTAGTAG GTGAATTTTCCCTTGCGGACTCGCTCAATCAAAACAACATTTTTTCTATTTCGGAGCTTGAAACAACGCTAACCAGTAGT TCTTACGCCTTGCAGAAACAAAGTGACAATTCAGTCATTGTAGATCCAGTAACCGTGACGGACGCAGAAGATATTCAATT ATTAAATGAGATATCTAAGGTTACAGCAGAAGCTATCAATTACGACAATAGCGATGTGACGATTGCTGATTGGAATAAAA TATACTAA
Upstream 100 bases:
>100_bases GATACGATTATGAATTTGCCTGTAGGCAAGACGAGTCTATCTATTTCCACACCGACTAAATTCAGTCAAGTTAAACAATA GATATTGAAGGATTAGCATT
Downstream 100 bases:
>100_bases TCAGATCATTAGTTACGATTGTTCGCAAGGCACTGCCTACTTTCCTTGCACTAAGCCACTCAGTCGAGTGGCTTTTTTTG TACGTCTCTTCTCCCCTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 455; Mature: 455
Protein sequence:
>455_residues MKKTVLASTICIGLLSSSIANANYNGAHEVGQNMRSSIDEMITTKLKASFFDSAALYMDATNATQLKTSPSGLLTSLVTG SQNTQLPLETRQELIDASQEVGFVVDYLKKNPKTKGVDKEVMDFCIAENIEAKNWPGIDYVVDQYGTKNGITTLPVSIIY FASKGNCQDPNDWAVKLSKSTTKSEFESSIPSEVIAYSSNVGNTGGELVYILENSYNFSDEPEEQFESFTFYQESSDDTP GTGLFRRTQVMKNSIDPNQAYSKFTNVVCKDCNSDNEKFKVESRSEFGSNQVSLASSAVVSGGKLIPGFVSETSTEAEYF VQVNLDPATPNVATSLFIDAFKFEDSLVHGRYYYDGNSGVKFNAEQLKATNLVGEFSLADSLNQNNIFSISELETTLTSS SYALQKQSDNSVIVDPVTVTDAEDIQLLNEISKVTAEAINYDNSDVTIADWNKIY
Sequences:
>Translated_455_residues MKKTVLASTICIGLLSSSIANANYNGAHEVGQNMRSSIDEMITTKLKASFFDSAALYMDATNATQLKTSPSGLLTSLVTG SQNTQLPLETRQELIDASQEVGFVVDYLKKNPKTKGVDKEVMDFCIAENIEAKNWPGIDYVVDQYGTKNGITTLPVSIIY FASKGNCQDPNDWAVKLSKSTTKSEFESSIPSEVIAYSSNVGNTGGELVYILENSYNFSDEPEEQFESFTFYQESSDDTP GTGLFRRTQVMKNSIDPNQAYSKFTNVVCKDCNSDNEKFKVESRSEFGSNQVSLASSAVVSGGKLIPGFVSETSTEAEYF VQVNLDPATPNVATSLFIDAFKFEDSLVHGRYYYDGNSGVKFNAEQLKATNLVGEFSLADSLNQNNIFSISELETTLTSS SYALQKQSDNSVIVDPVTVTDAEDIQLLNEISKVTAEAINYDNSDVTIADWNKIY >Mature_455_residues MKKTVLASTICIGLLSSSIANANYNGAHEVGQNMRSSIDEMITTKLKASFFDSAALYMDATNATQLKTSPSGLLTSLVTG SQNTQLPLETRQELIDASQEVGFVVDYLKKNPKTKGVDKEVMDFCIAENIEAKNWPGIDYVVDQYGTKNGITTLPVSIIY FASKGNCQDPNDWAVKLSKSTTKSEFESSIPSEVIAYSSNVGNTGGELVYILENSYNFSDEPEEQFESFTFYQESSDDTP GTGLFRRTQVMKNSIDPNQAYSKFTNVVCKDCNSDNEKFKVESRSEFGSNQVSLASSAVVSGGKLIPGFVSETSTEAEYF VQVNLDPATPNVATSLFIDAFKFEDSLVHGRYYYDGNSGVKFNAEQLKATNLVGEFSLADSLNQNNIFSISELETTLTSS SYALQKQSDNSVIVDPVTVTDAEDIQLLNEISKVTAEAINYDNSDVTIADWNKIY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49887; Mature: 49887
Theoretical pI: Translated: 4.17; Mature: 4.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTVLASTICIGLLSSSIANANYNGAHEVGQNMRSSIDEMITTKLKASFFDSAALYMDA CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC TNATQLKTSPSGLLTSLVTGSQNTQLPLETRQELIDASQEVGFVVDYLKKNPKTKGVDKE CCCCEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHH VMDFCIAENIEAKNWPGIDYVVDQYGTKNGITTLPVSIIYFASKGNCQDPNDWAVKLSKS HHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEECC TTKSEFESSIPSEVIAYSSNVGNTGGELVYILENSYNFSDEPEEQFESFTFYQESSDDTP CCHHHHHHCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHEEEEECCCCCCC GTGLFRRTQVMKNSIDPNQAYSKFTNVVCKDCNSDNEKFKVESRSEFGSNQVSLASSAVV CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHCCCCCCHHHHHHHH SGGKLIPGFVSETSTEAEYFVQVNLDPATPNVATSLFIDAFKFEDSLVHGRYYYDGNSGV CCCCCCCCHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECEEEEECCCCC KFNAEQLKATNLVGEFSLADSLNQNNIFSISELETTLTSSSYALQKQSDNSVIVDPVTVT EECHHHHHHHHHHEEEHHHHCCCCCCCEEHHHHHHHHCCCHHEEEECCCCCEEEECEEEC DAEDIQLLNEISKVTAEAINYDNSDVTIADWNKIY CHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC >Mature Secondary Structure MKKTVLASTICIGLLSSSIANANYNGAHEVGQNMRSSIDEMITTKLKASFFDSAALYMDA CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC TNATQLKTSPSGLLTSLVTGSQNTQLPLETRQELIDASQEVGFVVDYLKKNPKTKGVDKE CCCCEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHH VMDFCIAENIEAKNWPGIDYVVDQYGTKNGITTLPVSIIYFASKGNCQDPNDWAVKLSKS HHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEECC TTKSEFESSIPSEVIAYSSNVGNTGGELVYILENSYNFSDEPEEQFESFTFYQESSDDTP CCHHHHHHCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHEEEEECCCCCCC GTGLFRRTQVMKNSIDPNQAYSKFTNVVCKDCNSDNEKFKVESRSEFGSNQVSLASSAVV CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHCCCCCCHHHHHHHH SGGKLIPGFVSETSTEAEYFVQVNLDPATPNVATSLFIDAFKFEDSLVHGRYYYDGNSGV CCCCCCCCHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECEEEEECCCCC KFNAEQLKATNLVGEFSLADSLNQNNIFSISELETTLTSSSYALQKQSDNSVIVDPVTVT EECHHHHHHHHHHEEEHHHHCCCCCCCEEHHHHHHHHCCCHHEEEECCCCCEEEECEEEC DAEDIQLLNEISKVTAEAINYDNSDVTIADWNKIY CHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA