BacMap

Definition	Vibrio splendidus LGP32 chromosome 1, complete genome.
Accession	NC_011753
Length	3,299,303

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The map label for this gene is 218709028

Identifier: 218709028

GI number: 218709028

Start: 1074778

End: 1076238

Strand: Reverse

Name: 218709028

Synonym: VS_1034

Alternate gene names: NA

Gene position: 1076238-1074778 (Counterclockwise)

Preceding gene: 218709029

Following gene: 218709012

Centisome position: 32.62

GC content: 44.08

Gene sequence:

>1461_bases
ATGAAGCGAGAACAGTGGGGATCCCGAGCAGGATTTATCCTTGCCGCAGTAGGATCTGCTATTGGTTTAGGAAACATTTG
GCGTTTTCCATATATGGCTTATGAAAATGGCGGCGGTGCTTTTTTCATTCCATATCTATTTGCCATGCTTACGGCTGGTA
TCCCATTTATGATCCTAGAGTTCAGTATGGGTCAAAAATATCGTGGCTCTGCACCTGCAACCTTAGCGCGCATCAACTCA
AAATTTGAGTGGCTTGGCTGGTTCCAAGTGGGTGTAGCGGCTGTCATCGCGGTCTACTATGTTGCCGTTATCGGTTGGGC
AATTTCATACTTCGGTATGTCATTCAATCAAAGCTGGGGAACAGACACTAACGCATTCTTCTTCAGTGAATATTTAGCTC
TAGGTGATAACTCACCGACGAACCTAGGTAGCATCCAATGGGGCATCGCTGGCGCAATGTTACTCGCTTGGGCAATCACT
TATGCAGCTATCGTGGGTGGTGTTAAAGCTGGTATCGAACGAGCTTCTAAAGTAATGATGCCAGTGTTGTTCATAATGGT
GATTTTGCTTATCGGACGCATGGTTTTCCTTCCAGGTGCTCTAGATGGTGTGAACTACATGTTCGAACCTGATTTCAGCA
AGATCTGGGACGTAAAAGTATGGGCTGCTGCTTATGGACAAATCTTCTTCACGTTAAGTATCGGTTTTGCGATCATGTTG
GCTTACTCAAGCTATTTGCCAGAAAAATCAGATATCACGAACAACGCGTTCATGACGGTTCTTATCAACTGTGGTTTCTC
AATTCTTGCGGGTATTATGATTTTCTCTGTTCTTGGCTACATGGCTCAAGAACAAGGTAAACCATTAACTGAAGTAGTAT
CAGCAGGCGTTGGCCTTGCGTTTGTTACGCTACCTGCTGCGATTAATTTACTTCCAGCACCGTATATTCTGGGTCCACTA
TTCTTCTTTGCACTTGTTGTGGCTGGTTTAAGCTCTCATATCTCAATTATGGAAGCAGTAACATCTGCAATTATGGACAA
GCTGAACTGGAGCCGTAAAAAAGCAGCAAGTATTGTTATTGGCGTTGGTGTTGTGGTGTCTATGGCATTTGCAACTAACG
GCGGCCTACTTCTACTAGACCTAGTCGATCACTTCGCTAACAACGTCGGCATCATGGTAGGCGGATTCATTGAAATCCTT
CTAATGGCATGGCTACTAAACAAAGTTAGCGATGTACGTGCGTACGTCAATGAGATTTCAGATTTCTCTATTGGCGTATG
GTTTAACGTATGTTTACGCTTCGTCACTCCAGTTATGCTTGCAATCATTCTTGCAACTAAACTAAGCGCATTGTTTACAG
ACGGTTACGGTGGCTACGACCTGACTCTTGGCTGGGCGATGATCGCAGGATTACTAGCAATTGGCATTATCATAAATATG
ACAAGTAAGAAGGAAGCATAA

Upstream 100 bases:

>100_bases
TAAACAGTCAAACCGTTTGCCTGTTTTAACTATCATCTCCTTACCAAGCACAGCGTGACGAGAAGCTTCATACCTCAGGG
AAGTTGTAAAGGAGTTAAAT

Downstream 100 bases:

>100_bases
TCATGACAACGAGTGCGATTATTATGATGGTTCTTGGTCTTGGTATCACTTGGGGTGGTGCTGCAATTTGTATAAAGCGT
GCAATGGACAAACAGAAATA

Product: Na+-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MKREQWGSRAGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMLTAGIPFMILEFSMGQKYRGSAPATLARINS
KFEWLGWFQVGVAAVIAVYYVAVIGWAISYFGMSFNQSWGTDTNAFFFSEYLALGDNSPTNLGSIQWGIAGAMLLAWAIT
YAAIVGGVKAGIERASKVMMPVLFIMVILLIGRMVFLPGALDGVNYMFEPDFSKIWDVKVWAAAYGQIFFTLSIGFAIML
AYSSYLPEKSDITNNAFMTVLINCGFSILAGIMIFSVLGYMAQEQGKPLTEVVSAGVGLAFVTLPAAINLLPAPYILGPL
FFFALVVAGLSSHISIMEAVTSAIMDKLNWSRKKAASIVIGVGVVVSMAFATNGGLLLLDLVDHFANNVGIMVGGFIEIL
LMAWLLNKVSDVRAYVNEISDFSIGVWFNVCLRFVTPVMLAIILATKLSALFTDGYGGYDLTLGWAMIAGLLAIGIIINM
TSKKEA

Sequences:

>Translated_486_residues
MKREQWGSRAGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMLTAGIPFMILEFSMGQKYRGSAPATLARINS
KFEWLGWFQVGVAAVIAVYYVAVIGWAISYFGMSFNQSWGTDTNAFFFSEYLALGDNSPTNLGSIQWGIAGAMLLAWAIT
YAAIVGGVKAGIERASKVMMPVLFIMVILLIGRMVFLPGALDGVNYMFEPDFSKIWDVKVWAAAYGQIFFTLSIGFAIML
AYSSYLPEKSDITNNAFMTVLINCGFSILAGIMIFSVLGYMAQEQGKPLTEVVSAGVGLAFVTLPAAINLLPAPYILGPL
FFFALVVAGLSSHISIMEAVTSAIMDKLNWSRKKAASIVIGVGVVVSMAFATNGGLLLLDLVDHFANNVGIMVGGFIEIL
LMAWLLNKVSDVRAYVNEISDFSIGVWFNVCLRFVTPVMLAIILATKLSALFTDGYGGYDLTLGWAMIAGLLAIGIIINM
TSKKEA
>Mature_486_residues
MKREQWGSRAGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMLTAGIPFMILEFSMGQKYRGSAPATLARINS
KFEWLGWFQVGVAAVIAVYYVAVIGWAISYFGMSFNQSWGTDTNAFFFSEYLALGDNSPTNLGSIQWGIAGAMLLAWAIT
YAAIVGGVKAGIERASKVMMPVLFIMVILLIGRMVFLPGALDGVNYMFEPDFSKIWDVKVWAAAYGQIFFTLSIGFAIML
AYSSYLPEKSDITNNAFMTVLINCGFSILAGIMIFSVLGYMAQEQGKPLTEVVSAGVGLAFVTLPAAINLLPAPYILGPL
FFFALVVAGLSSHISIMEAVTSAIMDKLNWSRKKAASIVIGVGVVVSMAFATNGGLLLLDLVDHFANNVGIMVGGFIEIL
LMAWLLNKVSDVRAYVNEISDFSIGVWFNVCLRFVTPVMLAIILATKLSALFTDGYGGYDLTLGWAMIAGLLAIGIIINM
TSKKEA

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=493, Percent_Identity=32.4543610547667, Blast_Score=245, Evalue=6e-65,
Organism=Homo sapiens, GI4507043, Length=534, Percent_Identity=30.1498127340824, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI4507041, Length=518, Percent_Identity=29.1505791505791, Blast_Score=224, Evalue=2e-58,
Organism=Homo sapiens, GI134304856, Length=516, Percent_Identity=30.0387596899225, Blast_Score=222, Evalue=6e-58,
Organism=Homo sapiens, GI7657587, Length=443, Percent_Identity=30.4740406320542, Blast_Score=220, Evalue=2e-57,
Organism=Homo sapiens, GI171184408, Length=442, Percent_Identity=31.2217194570136, Blast_Score=218, Evalue=1e-56,
Organism=Homo sapiens, GI171184406, Length=442, Percent_Identity=31.2217194570136, Blast_Score=218, Evalue=1e-56,
Organism=Homo sapiens, GI171184404, Length=442, Percent_Identity=31.2217194570136, Blast_Score=218, Evalue=1e-56,
Organism=Homo sapiens, GI289191351, Length=486, Percent_Identity=29.8353909465021, Blast_Score=217, Evalue=2e-56,
Organism=Homo sapiens, GI4557046, Length=486, Percent_Identity=29.8353909465021, Blast_Score=217, Evalue=2e-56,
Organism=Homo sapiens, GI289191377, Length=486, Percent_Identity=29.8353909465021, Blast_Score=217, Evalue=2e-56,
Organism=Homo sapiens, GI188528618, Length=494, Percent_Identity=29.5546558704453, Blast_Score=212, Evalue=6e-55,
Organism=Homo sapiens, GI6005715, Length=542, Percent_Identity=30.0738007380074, Blast_Score=206, Evalue=5e-53,
Organism=Homo sapiens, GI67782317, Length=525, Percent_Identity=29.3333333333333, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI67782315, Length=525, Percent_Identity=29.3333333333333, Blast_Score=203, Evalue=3e-52,
Organism=Homo sapiens, GI67782313, Length=525, Percent_Identity=29.3333333333333, Blast_Score=203, Evalue=3e-52,
Organism=Homo sapiens, GI197276623, Length=524, Percent_Identity=27.8625954198473, Blast_Score=199, Evalue=4e-51,
Organism=Homo sapiens, GI54607094, Length=524, Percent_Identity=27.8625954198473, Blast_Score=199, Evalue=4e-51,
Organism=Homo sapiens, GI5032097, Length=487, Percent_Identity=29.9794661190965, Blast_Score=195, Evalue=6e-50,
Organism=Homo sapiens, GI92859670, Length=538, Percent_Identity=28.0669144981413, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI218563756, Length=487, Percent_Identity=29.5687885010267, Blast_Score=185, Evalue=9e-47,
Organism=Homo sapiens, GI58219014, Length=307, Percent_Identity=34.2019543973941, Blast_Score=170, Evalue=3e-42,
Organism=Homo sapiens, GI194018524, Length=528, Percent_Identity=26.3257575757576, Blast_Score=169, Evalue=4e-42,
Organism=Homo sapiens, GI51468073, Length=522, Percent_Identity=24.1379310344828, Blast_Score=162, Evalue=6e-40,
Organism=Homo sapiens, GI33354281, Length=306, Percent_Identity=31.6993464052288, Blast_Score=162, Evalue=8e-40,
Organism=Homo sapiens, GI300360519, Length=349, Percent_Identity=31.8051575931232, Blast_Score=159, Evalue=6e-39,
Organism=Homo sapiens, GI11181770, Length=496, Percent_Identity=25, Blast_Score=148, Evalue=9e-36,
Organism=Homo sapiens, GI289191353, Length=333, Percent_Identity=28.8288288288288, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI218563758, Length=308, Percent_Identity=29.8701298701299, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI12408638, Length=493, Percent_Identity=22.920892494929, Blast_Score=119, Evalue=7e-27,
Organism=Homo sapiens, GI21361693, Length=219, Percent_Identity=32.4200913242009, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI226437581, Length=255, Percent_Identity=28.2352941176471, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI55749589, Length=543, Percent_Identity=21.9152854511971, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI197276625, Length=129, Percent_Identity=37.2093023255814, Blast_Score=99, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17555248, Length=502, Percent_Identity=30.0796812749004, Blast_Score=234, Evalue=9e-62,
Organism=Caenorhabditis elegans, GI133952791, Length=552, Percent_Identity=30.0724637681159, Blast_Score=213, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17554804, Length=459, Percent_Identity=31.1546840958606, Blast_Score=197, Evalue=8e-51,
Organism=Caenorhabditis elegans, GI71995588, Length=484, Percent_Identity=27.4793388429752, Blast_Score=192, Evalue=3e-49,
Organism=Caenorhabditis elegans, GI25146584, Length=480, Percent_Identity=27.0833333333333, Blast_Score=172, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI71998244, Length=394, Percent_Identity=29.6954314720812, Blast_Score=164, Evalue=9e-41,
Organism=Caenorhabditis elegans, GI17569475, Length=537, Percent_Identity=23.8361266294227, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI17535731, Length=484, Percent_Identity=26.6528925619835, Blast_Score=161, Evalue=5e-40,
Organism=Caenorhabditis elegans, GI212642127, Length=290, Percent_Identity=30.3448275862069, Blast_Score=130, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI115534083, Length=461, Percent_Identity=21.2581344902386, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17542050, Length=131, Percent_Identity=39.6946564885496, Blast_Score=108, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17542048, Length=423, Percent_Identity=24.113475177305, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24654186, Length=517, Percent_Identity=30.9477756286267, Blast_Score=235, Evalue=6e-62,
Organism=Drosophila melanogaster, GI45550877, Length=498, Percent_Identity=30.7228915662651, Blast_Score=226, Evalue=3e-59,
Organism=Drosophila melanogaster, GI24582567, Length=436, Percent_Identity=31.4220183486239, Blast_Score=222, Evalue=5e-58,
Organism=Drosophila melanogaster, GI45551183, Length=416, Percent_Identity=32.4519230769231, Blast_Score=215, Evalue=4e-56,
Organism=Drosophila melanogaster, GI24762620, Length=473, Percent_Identity=29.3868921775898, Blast_Score=211, Evalue=8e-55,
Organism=Drosophila melanogaster, GI17136952, Length=445, Percent_Identity=31.0112359550562, Blast_Score=210, Evalue=2e-54,
Organism=Drosophila melanogaster, GI281363702, Length=488, Percent_Identity=29.9180327868852, Blast_Score=209, Evalue=3e-54,
Organism=Drosophila melanogaster, GI221329674, Length=504, Percent_Identity=28.1746031746032, Blast_Score=209, Evalue=4e-54,
Organism=Drosophila melanogaster, GI281364136, Length=506, Percent_Identity=30.4347826086957, Blast_Score=209, Evalue=5e-54,
Organism=Drosophila melanogaster, GI24639514, Length=504, Percent_Identity=28.1746031746032, Blast_Score=208, Evalue=5e-54,
Organism=Drosophila melanogaster, GI281364394, Length=444, Percent_Identity=31.0810810810811, Blast_Score=206, Evalue=2e-53,
Organism=Drosophila melanogaster, GI28574704, Length=444, Percent_Identity=31.0810810810811, Blast_Score=206, Evalue=2e-53,
Organism=Drosophila melanogaster, GI17136950, Length=444, Percent_Identity=31.0810810810811, Blast_Score=206, Evalue=2e-53,
Organism=Drosophila melanogaster, GI28574702, Length=444, Percent_Identity=31.0810810810811, Blast_Score=206, Evalue=2e-53,
Organism=Drosophila melanogaster, GI19921936, Length=486, Percent_Identity=29.4238683127572, Blast_Score=204, Evalue=8e-53,
Organism=Drosophila melanogaster, GI281365034, Length=527, Percent_Identity=28.4629981024668, Blast_Score=201, Evalue=9e-52,
Organism=Drosophila melanogaster, GI24639516, Length=524, Percent_Identity=27.0992366412214, Blast_Score=201, Evalue=1e-51,
Organism=Drosophila melanogaster, GI45551088, Length=487, Percent_Identity=29.7741273100616, Blast_Score=196, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24652942, Length=491, Percent_Identity=29.7352342158859, Blast_Score=196, Evalue=3e-50,
Organism=Drosophila melanogaster, GI19921352, Length=533, Percent_Identity=27.9549718574109, Blast_Score=194, Evalue=8e-50,
Organism=Drosophila melanogaster, GI24584353, Length=533, Percent_Identity=27.9549718574109, Blast_Score=194, Evalue=8e-50,
Organism=Drosophila melanogaster, GI24661428, Length=513, Percent_Identity=27.8752436647173, Blast_Score=189, Evalue=3e-48,
Organism=Drosophila melanogaster, GI24639853, Length=500, Percent_Identity=28, Blast_Score=181, Evalue=7e-46,
Organism=Drosophila melanogaster, GI24582569, Length=398, Percent_Identity=29.1457286432161, Blast_Score=171, Evalue=1e-42,
Organism=Drosophila melanogaster, GI281363700, Length=330, Percent_Identity=31.8181818181818, Blast_Score=171, Evalue=1e-42,
Organism=Drosophila melanogaster, GI24655079, Length=575, Percent_Identity=25.5652173913043, Blast_Score=164, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 52547; Mature: 52547

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS00761 SPASE_I_3 ; PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKREQWGSRAGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMLTAGIPFMILE
CCCCCCCCCCCHHHHHHHHHHCCCCHHHCCEEEEECCCCEEHHHHHHHHHHCCCCCEEEE
FSMGQKYRGSAPATLARINSKFEWLGWFQVGVAAVIAVYYVAVIGWAISYFGMSFNQSWG
ECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TDTNAFFFSEYLALGDNSPTNLGSIQWGIAGAMLLAWAITYAAIVGGVKAGIERASKVMM
CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVLFIMVILLIGRMVFLPGALDGVNYMFEPDFSKIWDVKVWAAAYGQIFFTLSIGFAIML
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYSSYLPEKSDITNNAFMTVLINCGFSILAGIMIFSVLGYMAQEQGKPLTEVVSAGVGLA
HHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHH
FVTLPAAINLLPAPYILGPLFFFALVVAGLSSHISIMEAVTSAIMDKLNWSRKKAASIVI
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
GVGVVVSMAFATNGGLLLLDLVDHFANNVGIMVGGFIEILLMAWLLNKVSDVRAYVNEIS
HHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DFSIGVWFNVCLRFVTPVMLAIILATKLSALFTDGYGGYDLTLGWAMIAGLLAIGIIINM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
TSKKEA
CCCCCC
>Mature Secondary Structure
MKREQWGSRAGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMLTAGIPFMILE
CCCCCCCCCCCHHHHHHHHHHCCCCHHHCCEEEEECCCCEEHHHHHHHHHHCCCCCEEEE
FSMGQKYRGSAPATLARINSKFEWLGWFQVGVAAVIAVYYVAVIGWAISYFGMSFNQSWG
ECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TDTNAFFFSEYLALGDNSPTNLGSIQWGIAGAMLLAWAITYAAIVGGVKAGIERASKVMM
CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVLFIMVILLIGRMVFLPGALDGVNYMFEPDFSKIWDVKVWAAAYGQIFFTLSIGFAIML
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYSSYLPEKSDITNNAFMTVLINCGFSILAGIMIFSVLGYMAQEQGKPLTEVVSAGVGLA
HHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHH
FVTLPAAINLLPAPYILGPLFFFALVVAGLSSHISIMEAVTSAIMDKLNWSRKKAASIVI
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
GVGVVVSMAFATNGGLLLLDLVDHFANNVGIMVGGFIEILLMAWLLNKVSDVRAYVNEIS
HHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DFSIGVWFNVCLRFVTPVMLAIILATKLSALFTDGYGGYDLTLGWAMIAGLLAIGIIINM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
TSKKEA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]