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The map label for this gene is yceD [H]

Identifier: 218709013

GI number: 218709013

Start: 1061506

End: 1062033

Strand: Direct

Name: yceD [H]

Synonym: VS_1019

Alternate gene names: 218709013

Gene position: 1061506-1062033 (Clockwise)

Preceding gene: 218709011

Following gene: 218709014

Centisome position: 32.17

GC content: 40.34

Gene sequence:

>528_bases
ATGCAAAAGGAAAAAATACCGCGTACAGTTGATCCGGCAAGAACGGCTCAAAAACGACTCGATATGGATGGTATCATTCA
AGTCAGTCTTTTAAAGCGTTTAACCGAAACAACTGAAGGCGTAAAACGTGACGCGCAAGTCTCAATGTCATTTGGGCTTG
ATGAACAACGATTAGTCGTTATCTCTGGTAAAGCTAACGTCGAAGTCGATTTAGAGTGTCAACGTTGTAATGAGGTTTTC
GCACATGAGTGCGATGTCCAATTTACTTATACTCCTGTTTACAGCGAGAAAAGTGAAGAGGAAGCACCGGAAGAGTACGA
TTTGGTAGATCTGAACGAGTACGGTGAGTTAGACCTGATTCAATTAGTTGAAGACGAGTTCATCCTTGGATTGCCACAAA
TAGCAATGCACGACGATGCGAAATGTAGCGTTAACTCAAATAACTTGGTGTTTGGTGAACTTCCTGAAGAAATTGAGGAA
GATAAAAAGCCGAATCCATTTGATGTTTTAAAAAACTTAAAGAAGTAA

Upstream 100 bases:

>100_bases
CCTGCTATTCATAATGCTCTGAACAGGAAAGGTAGGAAAGTACATTTTTTTTGCCATTTCCTTTGACTAAACACGATTTG
GAAGATAAGATTCGCGCCCT

Downstream 100 bases:

>100_bases
CTTATTAGTAAGTATCTTTAAGAATTTACATAGGAGTAGGGTCAATGGCCGTACAAAAGAGCAAGAAATCACGTTCAATG
CGTGGCATGCGTCGTTCACA

Product: hypothetical protein

Products: NA

Alternate protein names: G30K [H]

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MQKEKIPRTVDPARTAQKRLDMDGIIQVSLLKRLTETTEGVKRDAQVSMSFGLDEQRLVVISGKANVEVDLECQRCNEVF
AHECDVQFTYTPVYSEKSEEEAPEEYDLVDLNEYGELDLIQLVEDEFILGLPQIAMHDDAKCSVNSNNLVFGELPEEIEE
DKKPNPFDVLKNLKK

Sequences:

>Translated_175_residues
MQKEKIPRTVDPARTAQKRLDMDGIIQVSLLKRLTETTEGVKRDAQVSMSFGLDEQRLVVISGKANVEVDLECQRCNEVF
AHECDVQFTYTPVYSEKSEEEAPEEYDLVDLNEYGELDLIQLVEDEFILGLPQIAMHDDAKCSVNSNNLVFGELPEEIEE
DKKPNPFDVLKNLKK
>Mature_175_residues
MQKEKIPRTVDPARTAQKRLDMDGIIQVSLLKRLTETTEGVKRDAQVSMSFGLDEQRLVVISGKANVEVDLECQRCNEVF
AHECDVQFTYTPVYSEKSEEEAPEEYDLVDLNEYGELDLIQLVEDEFILGLPQIAMHDDAKCSVNSNNLVFGELPEEIEE
DKKPNPFDVLKNLKK

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0159 [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=175, Percent_Identity=48.5714285714286, Blast_Score=179, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 19965; Mature: 19965

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKEKIPRTVDPARTAQKRLDMDGIIQVSLLKRLTETTEGVKRDAQVSMSFGLDEQRLVV
CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEE
ISGKANVEVDLECQRCNEVFAHECDVQFTYTPVYSEKSEEEAPEEYDLVDLNEYGELDLI
EECCCCEEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCHHCCCCCCCEEECCCCCCCHHH
QLVEDEFILGLPQIAMHDDAKCSVNSNNLVFGELPEEIEEDKKPNPFDVLKNLKK
HHHHHHHHHCCCCHHCCCCCCEEECCCCEEECCCCHHHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure
MQKEKIPRTVDPARTAQKRLDMDGIIQVSLLKRLTETTEGVKRDAQVSMSFGLDEQRLVV
CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEE
ISGKANVEVDLECQRCNEVFAHECDVQFTYTPVYSEKSEEEAPEEYDLVDLNEYGELDLI
EECCCCEEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCHHCCCCCCCEEECCCCCCCHHH
QLVEDEFILGLPQIAMHDDAKCSVNSNNLVFGELPEEIEEDKKPNPFDVLKNLKK
HHHHHHHHHCCCCHHCCCCCCEEECCCCEEECCCCHHHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]