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The map label for this gene is yfcN [C]

Identifier: 218708868

GI number: 218708868

Start: 892222

End: 892812

Strand: Reverse

Name: yfcN [C]

Synonym: VS_0868

Alternate gene names: 218708868

Gene position: 892812-892222 (Counterclockwise)

Preceding gene: 218708881

Following gene: 218708866

Centisome position: 27.06

GC content: 45.85

Gene sequence:

>591_bases
TTGTCTCCGAAAAGCGCTACAATACTGCTAATTACGTTTCTAATTAGAATTCATAACCTGATGAGCAAAAAAGACACCGA
CTTCGATGACGATTTCGCCCTATTCAACGATGCAGTAAAGGGCGTTAAAAAGTTGCAACAGGATACCATAGTCCAGCAGC
CAAAAAGAAATGCCAAGCAAAAAGAAATTACTCGAACGGCAAGACAAGCCAGTGATAGCGAGTTTTATTTCTCGGATGAG
TTCATTCCGCATCTTAGCGAAGAGGGGCCGACACGTTATGCGCGCGATGATGTCTCTAAATATGAGGTGAAGCGCTTACG
TCGTGGTGTCTATGTACCGGATGTGTATCTTGATATGCACGGTATGACTCAACAGGAAGCCAAACGTGAACTTGGCGCGA
TGATTGCGCACTGCGTGAAAGAGAGCGTAGCTTGTGCCTGTGTACAGCACGGCATTGGTAAACACATCCTTAAACAGAAA
GTGCCTTTGTGGTTAGCACAGCACCCAGATGTGATGGCTTTTCACCAAGCACCTTTAGAGTTCGGTGGCCATGGGGCGCT
ACTGGTTTTACTTGCTATCCCAGATAAATAG

Upstream 100 bases:

>100_bases
AATAGGCCCGCTGCGTTAAAGCGACTAACAGTCCAACGAATCACATCTTGAAGCGTGTGTAGTTCTGATACCGCTTCTTC
TACAAAAATCTTATCCAAAA

Downstream 100 bases:

>100_bases
CCATCGACTTGCTCTTTATTCTAAAAAGTACGTCCAGCACCTTGTCGTTTGGTCGAAATAATCCGTTAGAAACAATAAAG
GGCATCTCAATAATCATGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MSPKSATILLITFLIRIHNLMSKKDTDFDDDFALFNDAVKGVKKLQQDTIVQQPKRNAKQKEITRTARQASDSEFYFSDE
FIPHLSEEGPTRYARDDVSKYEVKRLRRGVYVPDVYLDMHGMTQQEAKRELGAMIAHCVKESVACACVQHGIGKHILKQK
VPLWLAQHPDVMAFHQAPLEFGGHGALLVLLAIPDK

Sequences:

>Translated_196_residues
MSPKSATILLITFLIRIHNLMSKKDTDFDDDFALFNDAVKGVKKLQQDTIVQQPKRNAKQKEITRTARQASDSEFYFSDE
FIPHLSEEGPTRYARDDVSKYEVKRLRRGVYVPDVYLDMHGMTQQEAKRELGAMIAHCVKESVACACVQHGIGKHILKQK
VPLWLAQHPDVMAFHQAPLEFGGHGALLVLLAIPDK
>Mature_195_residues
SPKSATILLITFLIRIHNLMSKKDTDFDDDFALFNDAVKGVKKLQQDTIVQQPKRNAKQKEITRTARQASDSEFYFSDEF
IPHLSEEGPTRYARDDVSKYEVKRLRRGVYVPDVYLDMHGMTQQEAKRELGAMIAHCVKESVACACVQHGIGKHILKQKV
PLWLAQHPDVMAFHQAPLEFGGHGALLVLLAIPDK

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1788671, Length=174, Percent_Identity=55.7471264367816, Blast_Score=205, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 22229; Mature: 22098

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPKSATILLITFLIRIHNLMSKKDTDFDDDFALFNDAVKGVKKLQQDTIVQQPKRNAKQ
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCHHH
KEITRTARQASDSEFYFSDEFIPHLSEEGPTRYARDDVSKYEVKRLRRGVYVPDVYLDMH
HHHHHHHHHCCCCCEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHEECCC
GMTQQEAKRELGAMIAHCVKESVACACVQHGIGKHILKQKVPLWLAQHPDVMAFHQAPLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHCCHH
FGGHGALLVLLAIPDK
CCCCCEEEEEEECCCC
>Mature Secondary Structure 
SPKSATILLITFLIRIHNLMSKKDTDFDDDFALFNDAVKGVKKLQQDTIVQQPKRNAKQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCHHH
KEITRTARQASDSEFYFSDEFIPHLSEEGPTRYARDDVSKYEVKRLRRGVYVPDVYLDMH
HHHHHHHHHCCCCCEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHEECCC
GMTQQEAKRELGAMIAHCVKESVACACVQHGIGKHILKQKVPLWLAQHPDVMAFHQAPLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHCCHH
FGGHGALLVLLAIPDK
CCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]