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The map label for this gene is ccmC [H]

Identifier: 218708852

GI number: 218708852

Start: 872842

End: 873582

Strand: Direct

Name: ccmC [H]

Synonym: VS_0852

Alternate gene names: 218708852

Gene position: 872842-873582 (Clockwise)

Preceding gene: 218708851

Following gene: 218708853

Centisome position: 26.46

GC content: 46.15

Gene sequence:

>741_bases
ATGTGGAAATGGCTCCATCCCTACGCCAAAGCAGAAACCTCTTATCAGCTTGCTGGTAAACTTCTGCCATGGTTTTCGAT
CCTAGCGCTATTGTGTCTATCCGCCGGTACTGTATGGGGGCTTGCATTTGCCCCTTCTGATTACCAGCAAGGCGATAGCT
TCCGAATTATCTATATCCATGTTCCGTCTGCAATTTGGTCTATGGGTGTATACATGTCGATGGCAATTGCCGCCTTTATC
GGTTTGGTATGGCAGGTAAGGCTGTCAGACATGGCTGCGTTGGCTATGGCGCCTATCGGTGCTGTATTTACCTTTATTGC
GTTACTAACTGGCGCTGTTTGGGGTAAACCAATGTGGGGTGCTTGGTGGGTTTGGGATGCACGTTTAACCTCAGAGCTGA
TTCTTCTATTCCTATATTTAGGTGTTATTGCACTGCACCATGCGTTTGACGACCAAAAAACCGCAGCAAAAGCAGCCGGT
ATTTTGGCCATCGTTGGTGTCATCAACCTACCTATCATTCACTTTTCAGTAGAGTGGTGGAACACACTCCACCAAGGTGC
AACAATTACTAAGTTTGATAAGCCTTCTATTTCAAGTGACATGCTATGGCCGCTTCTTCTTAACATCTTCGGTTTTGCCT
TTTTCTTTGGTGCTGTGACTATGGTTCGTTTTAGAAACGAAATCATCAGTAAAGAGAGTCACCGTCCATGGGTTCGCAAG
CTAGCGGCTAATAAAGCGTAG

Upstream 100 bases:

>100_bases
AAACTCCTAGAGTCACTGAAAGAAGCTGTAAGCCAAATAAATTATAATAATTATAGCTGTGATAGCTGTAAGCAATATGA
AGTAAGAGTGAGATTACAAC

Downstream 100 bases:

>100_bases
TAGGGTAGGTAATTATGTATTTTGAATCTCTGAGTGATTTCTTTGCCATGGGTGGCTACGCCTCATATGTATGGAGTGCA
TTTGGAATCACATTCCTCGC

Product: cytochrome c-type biogenesis protein CcmC

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmC [H]

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MWKWLHPYAKAETSYQLAGKLLPWFSILALLCLSAGTVWGLAFAPSDYQQGDSFRIIYIHVPSAIWSMGVYMSMAIAAFI
GLVWQVRLSDMAALAMAPIGAVFTFIALLTGAVWGKPMWGAWWVWDARLTSELILLFLYLGVIALHHAFDDQKTAAKAAG
ILAIVGVINLPIIHFSVEWWNTLHQGATITKFDKPSISSDMLWPLLLNIFGFAFFFGAVTMVRFRNEIISKESHRPWVRK
LAANKA

Sequences:

>Translated_246_residues
MWKWLHPYAKAETSYQLAGKLLPWFSILALLCLSAGTVWGLAFAPSDYQQGDSFRIIYIHVPSAIWSMGVYMSMAIAAFI
GLVWQVRLSDMAALAMAPIGAVFTFIALLTGAVWGKPMWGAWWVWDARLTSELILLFLYLGVIALHHAFDDQKTAAKAAG
ILAIVGVINLPIIHFSVEWWNTLHQGATITKFDKPSISSDMLWPLLLNIFGFAFFFGAVTMVRFRNEIISKESHRPWVRK
LAANKA
>Mature_246_residues
MWKWLHPYAKAETSYQLAGKLLPWFSILALLCLSAGTVWGLAFAPSDYQQGDSFRIIYIHVPSAIWSMGVYMSMAIAAFI
GLVWQVRLSDMAALAMAPIGAVFTFIALLTGAVWGKPMWGAWWVWDARLTSELILLFLYLGVIALHHAFDDQKTAAKAAG
ILAIVGVINLPIIHFSVEWWNTLHQGATITKFDKPSISSDMLWPLLLNIFGFAFFFGAVTMVRFRNEIISKESHRPWVRK
LAANKA

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmC/CycZ/HelC family [H]

Homologues:

Organism=Escherichia coli, GI1788527, Length=246, Percent_Identity=60.1626016260163, Blast_Score=309, Evalue=1e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003557 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 27577; Mature: 27577

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKWLHPYAKAETSYQLAGKLLPWFSILALLCLSAGTVWGLAFAPSDYQQGDSFRIIYIH
CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCCCCEEEEEEE
VPSAIWSMGVYMSMAIAAFIGLVWQVRLSDMAALAMAPIGAVFTFIALLTGAVWGKPMWG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AWWVWDARLTSELILLFLYLGVIALHHAFDDQKTAAKAAGILAIVGVINLPIIHFSVEWW
EEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEEEHHHH
NTLHQGATITKFDKPSISSDMLWPLLLNIFGFAFFFGAVTMVRFRNEIISKESHRPWVRK
HHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
LAANKA
HHCCCC
>Mature Secondary Structure
MWKWLHPYAKAETSYQLAGKLLPWFSILALLCLSAGTVWGLAFAPSDYQQGDSFRIIYIH
CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCCCCEEEEEEE
VPSAIWSMGVYMSMAIAAFIGLVWQVRLSDMAALAMAPIGAVFTFIALLTGAVWGKPMWG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AWWVWDARLTSELILLFLYLGVIALHHAFDDQKTAAKAAGILAIVGVINLPIIHFSVEWW
EEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEEEHHHH
NTLHQGATITKFDKPSISSDMLWPLLLNIFGFAFFFGAVTMVRFRNEIISKESHRPWVRK
HHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
LAANKA
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]