| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218708446
Identifier: 218708446
GI number: 218708446
Start: 415138
End: 416079
Strand: Direct
Name: 218708446
Synonym: VS_0409
Alternate gene names: NA
Gene position: 415138-416079 (Clockwise)
Preceding gene: 218708445
Following gene: 218708450
Centisome position: 12.58
GC content: 44.48
Gene sequence:
>942_bases ATGTCACGTATTATGCACGAGCTTAAACAGTCTTCTAATAATAAACCTAGCTTTAAAGGTTACCAAAACCATCACGTGCC TAGTTCTGCTAAAGGGATTAGCAACAAACGAGGTTCATCGTTAACAATGGGACTGATCCTTGTCTTGGTGCCTTCTCTAT TGGTGGGCGGCGTTCTGGTTTATCAGTCGTATAATCAACAGCAGCAAGGCTCGGCTAGCCCCGTTGCCTCCGGAGCTCTG CCTGAATCAAAGCTTCAATCAGACTTTGAGCCTCAAATTGCCGGTTCTGGCATTGCCAGTGTGGATGCAGTGTCAGTGGA TGCAGGCGATGAAGCATTATTTTCTGTTCGCTCGGCACCGGTAAGCCAGCTTTTGAAAGCACTACCGCGTCAAGAGATAC ATGCAAAGATGGGCACCGACATCGGTAATATCGCTAGTGACTCAAAAGCGATCGTGGCAAATGTAGATAATAGTAATCAA GCAGCAACGAATTTAGATCCATTATCTATTGAACCGTCAGTTCAACCTGGAACGAATAATGATAATGTCACGCTGCAATC GGACCGTGATTTACTGAAAGGGTTAGACCTCACCGAGTTGCCACCCGATTTAGCGTTGAAGCTTGAATCAATGATGGGAG AGCAGTCGGTTTCATCTGAACCGATGGATTCTAGACCTGTGGGGAATATGGATTCTCAGGTCATCGATTTAGAAACACAT GGCAATAGATTGTCTGGTGTATTACCTAAGTTAGACTTACAAACTCACATGTACTCGAGTAGCGAAACTAAGCGTTGGGT AAAAGTGAATGGACATGAAGTTGCTCAAGGGGAATGGATCGAGCGGGGTATTCAGTTGCTTGAGATTAAACCACAATCGG TAATCATTGAATTCAATCAGCAGAAAATAGAAATCCCAGCTTTGTATGAGTGGAAAGGTTAG
Upstream 100 bases:
>100_bases CTGTTGATGGCATTGCAGGTAAGCTCACCTTGGCAAGATTGCAGAGATTAGCTCAACTCGATTCGCCTAAGTTGATGTCA CTAGAAGGGGGCGAAAGCTA
Downstream 100 bases:
>100_bases TACTATCGATATTACTTACTGTGATTGATGTTAGCGCTGTGACTTGAATGATAAATCCAGACAAATAAAAAGGAGTACCT CGGTGCTCCTTTTTGATATT
Product: general secretion pathway protein A
Products: NA
Alternate protein names: General Secretion Pathway Protein A; Type II Secretory Pathway Component ExeA
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MSRIMHELKQSSNNKPSFKGYQNHHVPSSAKGISNKRGSSLTMGLILVLVPSLLVGGVLVYQSYNQQQQGSASPVASGAL PESKLQSDFEPQIAGSGIASVDAVSVDAGDEALFSVRSAPVSQLLKALPRQEIHAKMGTDIGNIASDSKAIVANVDNSNQ AATNLDPLSIEPSVQPGTNNDNVTLQSDRDLLKGLDLTELPPDLALKLESMMGEQSVSSEPMDSRPVGNMDSQVIDLETH GNRLSGVLPKLDLQTHMYSSSETKRWVKVNGHEVAQGEWIERGIQLLEIKPQSVIIEFNQQKIEIPALYEWKG
Sequences:
>Translated_313_residues MSRIMHELKQSSNNKPSFKGYQNHHVPSSAKGISNKRGSSLTMGLILVLVPSLLVGGVLVYQSYNQQQQGSASPVASGAL PESKLQSDFEPQIAGSGIASVDAVSVDAGDEALFSVRSAPVSQLLKALPRQEIHAKMGTDIGNIASDSKAIVANVDNSNQ AATNLDPLSIEPSVQPGTNNDNVTLQSDRDLLKGLDLTELPPDLALKLESMMGEQSVSSEPMDSRPVGNMDSQVIDLETH GNRLSGVLPKLDLQTHMYSSSETKRWVKVNGHEVAQGEWIERGIQLLEIKPQSVIIEFNQQKIEIPALYEWKG >Mature_312_residues SRIMHELKQSSNNKPSFKGYQNHHVPSSAKGISNKRGSSLTMGLILVLVPSLLVGGVLVYQSYNQQQQGSASPVASGALP ESKLQSDFEPQIAGSGIASVDAVSVDAGDEALFSVRSAPVSQLLKALPRQEIHAKMGTDIGNIASDSKAIVANVDNSNQA ATNLDPLSIEPSVQPGTNNDNVTLQSDRDLLKGLDLTELPPDLALKLESMMGEQSVSSEPMDSRPVGNMDSQVIDLETHG NRLSGVLPKLDLQTHMYSSSETKRWVKVNGHEVAQGEWIERGIQLLEIKPQSVIIEFNQQKIEIPALYEWKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33814; Mature: 33682
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRIMHELKQSSNNKPSFKGYQNHHVPSSAKGISNKRGSSLTMGLILVLVPSLLVGGVLV CHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHE YQSYNQQQQGSASPVASGALPESKLQSDFEPQIAGSGIASVDAVSVDAGDEALFSVRSAP ECCCCHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCC VSQLLKALPRQEIHAKMGTDIGNIASDSKAIVANVDNSNQAATNLDPLSIEPSVQPGTNN HHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC DNVTLQSDRDLLKGLDLTELPPDLALKLESMMGEQSVSSEPMDSRPVGNMDSQVIDLETH CCEEEECCHHHHCCCCCCCCCHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCEEEEEECC GNRLSGVLPKLDLQTHMYSSSETKRWVKVNGHEVAQGEWIERGIQLLEIKPQSVIIEFNQ CCHHHCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCHHHHCCCEEEEECCCEEEEEECC QKIEIPALYEWKG CEEECCEEEECCC >Mature Secondary Structure SRIMHELKQSSNNKPSFKGYQNHHVPSSAKGISNKRGSSLTMGLILVLVPSLLVGGVLV HHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHE YQSYNQQQQGSASPVASGALPESKLQSDFEPQIAGSGIASVDAVSVDAGDEALFSVRSAP ECCCCHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCC VSQLLKALPRQEIHAKMGTDIGNIASDSKAIVANVDNSNQAATNLDPLSIEPSVQPGTNN HHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC DNVTLQSDRDLLKGLDLTELPPDLALKLESMMGEQSVSSEPMDSRPVGNMDSQVIDLETH CCEEEECCHHHHCCCCCCCCCHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCEEEEEECC GNRLSGVLPKLDLQTHMYSSSETKRWVKVNGHEVAQGEWIERGIQLLEIKPQSVIIEFNQ CCHHHCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCHHHHCCCEEEEECCCEEEEEECC QKIEIPALYEWKG CEEECCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA