| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218708413
Identifier: 218708413
GI number: 218708413
Start: 374673
End: 375218
Strand: Direct
Name: 218708413
Synonym: VS_0375
Alternate gene names: NA
Gene position: 374673-375218 (Clockwise)
Preceding gene: 218708412
Following gene: 218708419
Centisome position: 11.36
GC content: 45.6
Gene sequence:
>546_bases ATGACGGTAACGTATCAGGATGTTCTAGAGTTTTGGTTCGATGAGCTGACGCCTAAAGATTGGTTTACTGGCGGCGCCGA GATTGACGTTGTGATTGAGTCTCGATTTACTGAACTGCACAAAGCCGCTATCCAAGGTGAGTTATTTGAATGGCGACAAA ACGCACAAGGGCGATTGGCAGAGATTATCGTGCTTGATCAGTTTTCTCGAAATATTGGTAGAAACAGTCCGACAGCTTTT TCGGCTGACCCGATGGCGTTAGTTCTAGCGCAAGAGGCGGTAGCGGGTGGTTTTGATCACCAGCTTAACGAGCAACAAAA AAGCTTCCTGTATATGCCTTATATGCACAGTGAATCTTTGTTGGTTCATGAACAAGCCGTGGAGCTCTTTTCTCAAACGG GGTTAGAACATAATCTGGATTTTGAGTTTAAGCACAAGGTCATCATTGAGCGTTTTGGTCGCTACCCTCATCGTAATGAG GTGCTAGGGCGAATTTCGACTCCTGAAGAGGTTGAGTTCTTGCAGCAACCGGGTTCAAGTTTTTAA
Upstream 100 bases:
>100_bases AAATGCTTATGACCTGATAAAGAAGGTCAAAGGTTTTAAGTAATCGAACACTAAACCGAGTAATAACAAAGTTACTCGGT TTTTTATTAAAGGGAATTAT
Downstream 100 bases:
>100_bases TTGTAGAAATACGGTTCAATAGATAAAAAAGAGGCAAGTGGTTAATAAAAACCTTTCGCCTCTTTTTTGTTTAGCTGCAT TCATGAGCTTTAACGTTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MTVTYQDVLEFWFDELTPKDWFTGGAEIDVVIESRFTELHKAAIQGELFEWRQNAQGRLAEIIVLDQFSRNIGRNSPTAF SADPMALVLAQEAVAGGFDHQLNEQQKSFLYMPYMHSESLLVHEQAVELFSQTGLEHNLDFEFKHKVIIERFGRYPHRNE VLGRISTPEEVEFLQQPGSSF
Sequences:
>Translated_181_residues MTVTYQDVLEFWFDELTPKDWFTGGAEIDVVIESRFTELHKAAIQGELFEWRQNAQGRLAEIIVLDQFSRNIGRNSPTAF SADPMALVLAQEAVAGGFDHQLNEQQKSFLYMPYMHSESLLVHEQAVELFSQTGLEHNLDFEFKHKVIIERFGRYPHRNE VLGRISTPEEVEFLQQPGSSF >Mature_180_residues TVTYQDVLEFWFDELTPKDWFTGGAEIDVVIESRFTELHKAAIQGELFEWRQNAQGRLAEIIVLDQFSRNIGRNSPTAFS ADPMALVLAQEAVAGGFDHQLNEQQKSFLYMPYMHSESLLVHEQAVELFSQTGLEHNLDFEFKHKVIIERFGRYPHRNEV LGRISTPEEVEFLQQPGSSF
Specific function: Unknown
COG id: COG3803
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20881; Mature: 20749
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVTYQDVLEFWFDELTPKDWFTGGAEIDVVIESRFTELHKAAIQGELFEWRQNAQGRLA CCCCHHHHHHHHHHHCCCHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHH EIIVLDQFSRNIGRNSPTAFSADPMALVLAQEAVAGGFDHQLNEQQKSFLYMPYMHSESL HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCHHHHCEEECCCCCCCCH LVHEQAVELFSQTGLEHNLDFEFKHKVIIERFGRYPHRNEVLGRISTPEEVEFLQQPGSS HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHCCCCC F C >Mature Secondary Structure TVTYQDVLEFWFDELTPKDWFTGGAEIDVVIESRFTELHKAAIQGELFEWRQNAQGRLA CCCHHHHHHHHHHHCCCHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHH EIIVLDQFSRNIGRNSPTAFSADPMALVLAQEAVAGGFDHQLNEQQKSFLYMPYMHSESL HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCHHHHCEEECCCCCCCCH LVHEQAVELFSQTGLEHNLDFEFKHKVIIERFGRYPHRNEVLGRISTPEEVEFLQQPGSS HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHCCCCC F C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA