Click here to switch to the map view.

The map label for this gene is waaF [H]

Identifier: 218708251

GI number: 218708251

Start: 183492

End: 184547

Strand: Direct

Name: waaF [H]

Synonym: VS_0188

Alternate gene names: 218708251

Gene position: 183492-184547 (Clockwise)

Preceding gene: 218708250

Following gene: 218708252

Centisome position: 5.56

GC content: 43.75

Gene sequence:

>1056_bases
ATGAAAATTCTGATTATTGGCCCGTCATGGGTTGGAGACATGGTAATGTCTCAAGGCTTATATATTGAGTTGCAAAGACA
GTATCCTGACGCAAAAATTGATGTTTTAGCGCCAGCGTGGTGTAAGCCTATTTTGGAAAGAATGCCACAAGTCAATCAAG
CTCTTGAAATGCCACTAGGGCATGGGCAATTTGATCTGAAATCTCGTTATAAGATCGGTAAATCGTTGAGGGAAGTACAG
TACGATAAAGCGTACGTATTACCTAACTCCGCGAAATCAGCTTTAATTCCCCTGTTTGCTCGCGTTCCTGAACGAGTTGG
TTGGAAAGGTGAAATGCGTTTTGGTTTGCTAAATGACGTTAGAACCAATAAAAAAGCGTTTCAATACATGTTAGAGCGAT
ATGTAGCGTTAGCGCACCCTAAAGCTGAAATGACGGGTAGTGGTTGTTTAGGTGAATTACCATCATTACCTTTCCCAAGT
TTGCAAGTTGTTAACTCCAGCCAACAAGAGGCTATGGAGCAATTTGGTTTAAACAATCAAAGGCCTGTCCTTGGTTTATG
TCCTGGTGCTGAGTTTGGCCCTGCGAAACGTTGGCCTGATAATCACTTTGCAACAGCAGCGACAGCGATGATAAAGCAAG
GTTACCAAGTGTGGTTGTTTGGCTCGGCTAAAGATCGTGAAGTAACCCAAAAGATAATCGAACAAGTCCCTGTTAATATG
CAGCAGCATTGCTTCAATTTAGCTGGAGATACGAGCTTAATTCAGGCTGTAGACTTGATCGGGGCTTGTCGTACTGTCGT
TAGCAATGATTCTGGGTTGATGCATGTGGCCGCCGCGGTGGGCTGTAATGTCGTGGCTGTTTATGGCTCTAGTTCACCTA
AATATACGCCTCCGCTAACGAACAAACTGGCGATCATCAATACCGATATTGAGTGCCGACCTTGCTTTGAACGAACTTGT
CCCAAGCAGCACCTAAAGTGCCTCACTGAGTTAATGCCGAGTAGAGTCATTAGTGCTATTGAGCAGTTTGATGTTATTTC
CCAAGGCAAAATATAA

Upstream 100 bases:

>100_bases
ATGAACAACTAGAAAAATTGGTTTGCATTAAAACACTTCAAGAATATTTTAGACTATCTGGCCAAGCTATTAACGAACAC
GCTATTAACGAGCAAGACAA

Downstream 100 bases:

>100_bases
ATAAGGTCGTTATATGAGCATCGTCGTTCGTTGGGCCTATACCGCGCTACTTTTCCTTGTTAGCCCTATTCTGCTTTGGG
GCTTATATCGCTCCAAAGCA

Product: ADP-heptose:LPS heptosyltransferase II

Products: NA

Alternate protein names: ADP-heptose--LPS heptosyltransferase II [H]

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MKILIIGPSWVGDMVMSQGLYIELQRQYPDAKIDVLAPAWCKPILERMPQVNQALEMPLGHGQFDLKSRYKIGKSLREVQ
YDKAYVLPNSAKSALIPLFARVPERVGWKGEMRFGLLNDVRTNKKAFQYMLERYVALAHPKAEMTGSGCLGELPSLPFPS
LQVVNSSQQEAMEQFGLNNQRPVLGLCPGAEFGPAKRWPDNHFATAATAMIKQGYQVWLFGSAKDREVTQKIIEQVPVNM
QQHCFNLAGDTSLIQAVDLIGACRTVVSNDSGLMHVAAAVGCNVVAVYGSSSPKYTPPLTNKLAIINTDIECRPCFERTC
PKQHLKCLTELMPSRVISAIEQFDVISQGKI

Sequences:

>Translated_351_residues
MKILIIGPSWVGDMVMSQGLYIELQRQYPDAKIDVLAPAWCKPILERMPQVNQALEMPLGHGQFDLKSRYKIGKSLREVQ
YDKAYVLPNSAKSALIPLFARVPERVGWKGEMRFGLLNDVRTNKKAFQYMLERYVALAHPKAEMTGSGCLGELPSLPFPS
LQVVNSSQQEAMEQFGLNNQRPVLGLCPGAEFGPAKRWPDNHFATAATAMIKQGYQVWLFGSAKDREVTQKIIEQVPVNM
QQHCFNLAGDTSLIQAVDLIGACRTVVSNDSGLMHVAAAVGCNVVAVYGSSSPKYTPPLTNKLAIINTDIECRPCFERTC
PKQHLKCLTELMPSRVISAIEQFDVISQGKI
>Mature_351_residues
MKILIIGPSWVGDMVMSQGLYIELQRQYPDAKIDVLAPAWCKPILERMPQVNQALEMPLGHGQFDLKSRYKIGKSLREVQ
YDKAYVLPNSAKSALIPLFARVPERVGWKGEMRFGLLNDVRTNKKAFQYMLERYVALAHPKAEMTGSGCLGELPSLPFPS
LQVVNSSQQEAMEQFGLNNQRPVLGLCPGAEFGPAKRWPDNHFATAATAMIKQGYQVWLFGSAKDREVTQKIIEQVPVNM
QQHCFNLAGDTSLIQAVDLIGACRTVVSNDSGLMHVAAAVGCNVVAVYGSSSPKYTPPLTNKLAIINTDIECRPCFERTC
PKQHLKCLTELMPSRVISAIEQFDVISQGKI

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790050, Length=341, Percent_Identity=52.7859237536657, Blast_Score=368, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011910 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 38940; Mature: 38940

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILIIGPSWVGDMVMSQGLYIELQRQYPDAKIDVLAPAWCKPILERMPQVNQALEMPLG
CEEEEECCHHHHHHHHCCCCEEEEECCCCCCEEEEECHHHHHHHHHHCHHHHHHHHCCCC
HGQFDLKSRYKIGKSLREVQYDKAYVLPNSAKSALIPLFARVPERVGWKGEMRFGLLNDV
CCCCCHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHH
RTNKKAFQYMLERYVALAHPKAEMTGSGCLGELPSLPFPSLQVVNSSQQEAMEQFGLNNQ
HHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCC
RPVLGLCPGAEFGPAKRWPDNHFATAATAMIKQGYQVWLFGSAKDREVTQKIIEQVPVNM
CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCH
QQHCFNLAGDTSLIQAVDLIGACRTVVSNDSGLMHVAAAVGCNVVAVYGSSSPKYTPPLT
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCC
NKLAIINTDIECRPCFERTCPKQHLKCLTELMPSRVISAIEQFDVISQGKI
CCEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKILIIGPSWVGDMVMSQGLYIELQRQYPDAKIDVLAPAWCKPILERMPQVNQALEMPLG
CEEEEECCHHHHHHHHCCCCEEEEECCCCCCEEEEECHHHHHHHHHHCHHHHHHHHCCCC
HGQFDLKSRYKIGKSLREVQYDKAYVLPNSAKSALIPLFARVPERVGWKGEMRFGLLNDV
CCCCCHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHH
RTNKKAFQYMLERYVALAHPKAEMTGSGCLGELPSLPFPSLQVVNSSQQEAMEQFGLNNQ
HHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCC
RPVLGLCPGAEFGPAKRWPDNHFATAATAMIKQGYQVWLFGSAKDREVTQKIIEQVPVNM
CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCH
QQHCFNLAGDTSLIQAVDLIGACRTVVSNDSGLMHVAAAVGCNVVAVYGSSSPKYTPPLT
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCC
NKLAIINTDIECRPCFERTCPKQHLKCLTELMPSRVISAIEQFDVISQGKI
CCEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2198271; 8478319 [H]