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The map label for this gene is lpsA [H]

Identifier: 218708250

GI number: 218708250

Start: 182545

End: 183495

Strand: Direct

Name: lpsA [H]

Synonym: VS_0187

Alternate gene names: 218708250

Gene position: 182545-183495 (Clockwise)

Preceding gene: 218708249

Following gene: 218708251

Centisome position: 5.53

GC content: 36.7

Gene sequence:

>951_bases
ATGAAGATATTTTATTATCTAAAACATGCCTTGCTCTCTATCGCACCTCGTTTGTATTTTTCAAAACAGTTTGAAAAGCT
GGAAAAGTCATATTCCGGTCAAGCTGACTATATAAAAAGCAGAGTAAATTATTATGTGAAAGGGCTCGGCGACTTTGATA
AGGCTAGTCTAAGCTGCGAGATTAGTAATTATTCTCGAAAAGGCTACACATCTTATTTCTTTGATCTTAAAGAGTTTCTT
CATTATTTTCCAAAGTACTTTCGTTTCAGTTACTACTTTGGTGATGAAACGCATATAGAGCCAGTTCCAACGTTATTTAA
AGCTCGTCCGATTGCTGGGAACAATAGTAACTCTGTACTATTTAAATTAGATAAGCGTCGTCATTTCCGATTCGTGGATG
ATAGCTTAAGTTTTTCTGATAAAAAAAATATGGCCGTATTTCGTGGTGCTGTGACTCAACCACATAGAATTCGTTTTATG
AAAACTCTGTATGGTCATCCACTGATGAATGCAGGTCAATCGAATACTTCAGAGCAAAACCCAGAGTGGCAACAACCATT
TATGACAGTCGAAGAGCAGCTTCAATACAAATTCATTATTTGCCTTGAAGGGAACGATGTTGCATCAAACTTGAAGTGGG
CAATGTCTTCAAACTCACTTGTCGTTACTCCAAAAATGAAGTTTGAAACGTGGTTTATGGAAGGCACTCTACAGCCAGGC
ATACATTATGTAGAGGTGAAGGATGACTGGTCGGATTTTGAGCAAAAAATTAAATACTATTTAGACAACCCTAAAGAGTC
TGAACAGATGATCAAAAATGCGCATGAATACCTTGCTCCTTTCCAAGATGAACAACTAGAAAAATTGGTTTGCATTAAAA
CACTTCAAGAATATTTTAGACTATCTGGCCAAGCTATTAACGAACACGCTATTAACGAGCAAGACAAATGA

Upstream 100 bases:

>100_bases
AGGCAGAGTCTACCTCTAGAGCTTTGTTGATAATTCCTTACCTATGGCTGCTGACTTTGCCTTCGTTACATTACGCAAAA
ATAAAATATAAAGAGAAACT

Downstream 100 bases:

>100_bases
AAATTCTGATTATTGGCCCGTCATGGGTTGGAGACATGGTAATGTCTCAAGGCTTATATATTGAGTTGCAAAGACAGTAT
CCTGACGCAAAAATTGATGT

Product: putative lipopolysaccharide A protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKIFYYLKHALLSIAPRLYFSKQFEKLEKSYSGQADYIKSRVNYYVKGLGDFDKASLSCEISNYSRKGYTSYFFDLKEFL
HYFPKYFRFSYYFGDETHIEPVPTLFKARPIAGNNSNSVLFKLDKRRHFRFVDDSLSFSDKKNMAVFRGAVTQPHRIRFM
KTLYGHPLMNAGQSNTSEQNPEWQQPFMTVEEQLQYKFIICLEGNDVASNLKWAMSSNSLVVTPKMKFETWFMEGTLQPG
IHYVEVKDDWSDFEQKIKYYLDNPKESEQMIKNAHEYLAPFQDEQLEKLVCIKTLQEYFRLSGQAINEHAINEQDK

Sequences:

>Translated_316_residues
MKIFYYLKHALLSIAPRLYFSKQFEKLEKSYSGQADYIKSRVNYYVKGLGDFDKASLSCEISNYSRKGYTSYFFDLKEFL
HYFPKYFRFSYYFGDETHIEPVPTLFKARPIAGNNSNSVLFKLDKRRHFRFVDDSLSFSDKKNMAVFRGAVTQPHRIRFM
KTLYGHPLMNAGQSNTSEQNPEWQQPFMTVEEQLQYKFIICLEGNDVASNLKWAMSSNSLVVTPKMKFETWFMEGTLQPG
IHYVEVKDDWSDFEQKIKYYLDNPKESEQMIKNAHEYLAPFQDEQLEKLVCIKTLQEYFRLSGQAINEHAINEQDK
>Mature_316_residues
MKIFYYLKHALLSIAPRLYFSKQFEKLEKSYSGQADYIKSRVNYYVKGLGDFDKASLSCEISNYSRKGYTSYFFDLKEFL
HYFPKYFRFSYYFGDETHIEPVPTLFKARPIAGNNSNSVLFKLDKRRHFRFVDDSLSFSDKKNMAVFRGAVTQPHRIRFM
KTLYGHPLMNAGQSNTSEQNPEWQQPFMTVEEQLQYKFIICLEGNDVASNLKWAMSSNSLVVTPKMKFETWFMEGTLQPG
IHYVEVKDDWSDFEQKIKYYLDNPKESEQMIKNAHEYLAPFQDEQLEKLVCIKTLQEYFRLSGQAINEHAINEQDK

Specific function: Involved in lipopolysaccharide core biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 90 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006598 [H]

Pfam domain/function: PF05686 DUF821 [H]

EC number: NA

Molecular weight: Translated: 37387; Mature: 37387

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFYYLKHALLSIAPRLYFSKQFEKLEKSYSGQADYIKSRVNYYVKGLGDFDKASLSCE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEE
ISNYSRKGYTSYFFDLKEFLHYFPKYFRFSYYFGDETHIEPVPTLFKARPIAGNNSNSVL
ECCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHCCCCCCCCCCEEE
FKLDKRRHFRFVDDSLSFSDKKNMAVFRGAVTQPHRIRFMKTLYGHPLMNAGQSNTSEQN
EEEECCCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
PEWQQPFMTVEEQLQYKFIICLEGNDVASNLKWAMSSNSLVVTPKMKFETWFMEGTLQPG
CCCCCHHHHHHHCCCEEEEEEECCCCHHCCCEEEECCCCEEEECCCEEEEEEECCCCCCC
IHYVEVKDDWSDFEQKIKYYLDNPKESEQMIKNAHEYLAPFQDEQLEKLVCIKTLQEYFR
EEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LSGQAINEHAINEQDK
HCCCHHHHHCCCCCCC
>Mature Secondary Structure
MKIFYYLKHALLSIAPRLYFSKQFEKLEKSYSGQADYIKSRVNYYVKGLGDFDKASLSCE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEE
ISNYSRKGYTSYFFDLKEFLHYFPKYFRFSYYFGDETHIEPVPTLFKARPIAGNNSNSVL
ECCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHCCCCCCCCCCEEE
FKLDKRRHFRFVDDSLSFSDKKNMAVFRGAVTQPHRIRFMKTLYGHPLMNAGQSNTSEQN
EEEECCCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
PEWQQPFMTVEEQLQYKFIICLEGNDVASNLKWAMSSNSLVVTPKMKFETWFMEGTLQPG
CCCCCHHHHHHHCCCEEEEEEECCCCHHCCCEEEECCCCEEEECCCEEEEEEECCCCCCC
IHYVEVKDDWSDFEQKIKYYLDNPKESEQMIKNAHEYLAPFQDEQLEKLVCIKTLQEYFR
EEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LSGQAINEHAINEQDK
HCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7539688 [H]