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The map label for this gene is cspG [H]

Identifier: 218708238

GI number: 218708238

Start: 172758

End: 172970

Strand: Direct

Name: cspG [H]

Synonym: VS_0175

Alternate gene names: 218708238

Gene position: 172758-172970 (Clockwise)

Preceding gene: 218708237

Following gene: 218708240

Centisome position: 5.24

GC content: 43.66

Gene sequence:

>213_bases
ATGTCTAACAAAACAAACGGCGTAGTAAAATGGTTTAACGAAGAGAAAGGCTTCGGTTTCCTAACTCAAGACAACGGCGG
CGCTGACGTATTCGTACACTTCCGTGCAATCGCTTCTGAAGGTTTCAAGACTCTTAAAGAAGGCCAACAAGTGTCTTTCG
AAGTAGAGCAAGGCCAAAAAGGTCTTCAAGCTGCAAACGTTGTAGCTCTATAA

Upstream 100 bases:

>100_bases
CAGTGTTTCCCTTGGCTTCATAGATACATTAAATAATTCAAGCTTTCAGCGCATCGCACTTTTGGCGATTAATTTTTTAT
TTTTATATAAGGGACACATC

Downstream 100 bases:

>100_bases
GATTTTAAGTCGGCGCAGGTTGCATTAGCAACTTGCGTCACTTTCTCTCTAAAACCAGTTTTCCCTCAGTTTTACAGTAA
CACTCTTCTCCACTTGCAAT

Product: putative cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSNKTNGVVKWFNEEKGFGFLTQDNGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQKGLQAANVVAL

Sequences:

>Translated_70_residues
MSNKTNGVVKWFNEEKGFGFLTQDNGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQKGLQAANVVAL
>Mature_69_residues
SNKTNGVVKWFNEEKGFGFLTQDNGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQKGLQAANVVAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=64.2857142857143, Blast_Score=97, Evalue=3e-22,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=60, Blast_Score=94, Evalue=2e-21,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=62.8571428571429, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=63.2352941176471, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=57.3529411764706, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=62.6865671641791, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=50, Blast_Score=75, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=46.031746031746, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7636; Mature: 7504

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKTNGVVKWFNEEKGFGFLTQDNGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQK
CCCCCCCEEEEECCCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHCCCEEEEEECCCCC
GLQAANVVAL
CCCCCCEECC
>Mature Secondary Structure 
SNKTNGVVKWFNEEKGFGFLTQDNGGADVFVHFRAIASEGFKTLKEGQQVSFEVEQGQK
CCCCCCEEEEECCCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHCCCEEEEEECCCCC
GLQAANVVAL
CCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10483731 [H]