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The map label for this gene is ulaR [H]

Identifier: 218708237

GI number: 218708237

Start: 171559

End: 172335

Strand: Direct

Name: ulaR [H]

Synonym: VS_0174

Alternate gene names: 218708237

Gene position: 171559-172335 (Clockwise)

Preceding gene: 218708226

Following gene: 218708238

Centisome position: 5.2

GC content: 43.11

Gene sequence:

>777_bases
ATGAATGAAGCTCAGCGTCATAGAAGCTTGTTAGATCATCTAACGAGTCATACGTTTATAACGACAAATGACTATGTGAA
GATGTTAGATATCTCTTTATCTACAGCTCGTCGGGACATTACAAAGTTGGCGGAAGAAGGGAGGCTGAAAAAAATCCGTA
ATGGGGCAGAGGTAATCAATTTTGACTCGTCCCTAGCCGCAACTCATGCACCAAGCAGCTTTATCCCCTGCGAAACAGAT
ATAGAAAGCTATGTAGCGAAAAAGCGAATTGCTAAAGCTGCGGCAGATATGTGTGAAGAACACGACAGTATTATTGTGAG
TGGTAGCAATACGACTTTTTTGATGGGAGAGCATTTAGCGCATCGTGATGTGCAAGTTGTGACGAATTTTATGCCATTGG
CTTATCAGCTGATTAGTCAAGATCATCAAAGTATCATCATACTTGGTGGCCAATATCTACCCGAACGTCAGATCACTATT
TCTCCAGATGAAGAAGCAGCAGATGACCATAAAAGTCGTTTTGTCTTCTTTACGGGTACGGGTGTTACGACAGCTGGTGT
GCATACCTCTGATCTATTGGTCTATATGGCAGAGAAAAAGCTGCTGGAGTATGGTGATCGTATTGTGGCTCTGATAGATA
GCAGCAAAGTAGGTAAGCATGGTGGGAAGTTACTCGCTACCGCTTCTCAGATTGACACATTGATTACAGATGACGGCGCT
GACCCTAAGGTGCTTGATGCTTTACGAGAACTTGGTGTGAAGATACAGGTAGTTTAG

Upstream 100 bases:

>100_bases
TTTGAGTCAAATTAATTCAAAAGAGTTCATTTTGAGAATCTAATTGCTCAAAAGTTCATAATGCGTCAAAATAATCCAAA
AGAACTTAATGGTATGAACA

Downstream 100 bases:

>100_bases
TTACGTGGAGAGTGCTGTTGCGGCGTTTGTTTTTGCTTTTGTCGTACTCTTGATTCTAGTAGAACATTATTACTGGCCGT
GTGTGTTGTCCGAACCAAAC

Product: transcriptional repressor UlaR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MNEAQRHRSLLDHLTSHTFITTNDYVKMLDISLSTARRDITKLAEEGRLKKIRNGAEVINFDSSLAATHAPSSFIPCETD
IESYVAKKRIAKAAADMCEEHDSIIVSGSNTTFLMGEHLAHRDVQVVTNFMPLAYQLISQDHQSIIILGGQYLPERQITI
SPDEEAADDHKSRFVFFTGTGVTTAGVHTSDLLVYMAEKKLLEYGDRIVALIDSSKVGKHGGKLLATASQIDTLITDDGA
DPKVLDALRELGVKIQVV

Sequences:

>Translated_258_residues
MNEAQRHRSLLDHLTSHTFITTNDYVKMLDISLSTARRDITKLAEEGRLKKIRNGAEVINFDSSLAATHAPSSFIPCETD
IESYVAKKRIAKAAADMCEEHDSIIVSGSNTTFLMGEHLAHRDVQVVTNFMPLAYQLISQDHQSIIILGGQYLPERQITI
SPDEEAADDHKSRFVFFTGTGVTTAGVHTSDLLVYMAEKKLLEYGDRIVALIDSSKVGKHGGKLLATASQIDTLITDDGA
DPKVLDALRELGVKIQVV
>Mature_258_residues
MNEAQRHRSLLDHLTSHTFITTNDYVKMLDISLSTARRDITKLAEEGRLKKIRNGAEVINFDSSLAATHAPSSFIPCETD
IESYVAKKRIAKAAADMCEEHDSIIVSGSNTTFLMGEHLAHRDVQVVTNFMPLAYQLISQDHQSIIILGGQYLPERQITI
SPDEEAADDHKSRFVFFTGTGVTTAGVHTSDLLVYMAEKKLLEYGDRIVALIDSSKVGKHGGKLLATASQIDTLITDDGA
DPKVLDALRELGVKIQVV

Specific function: Represses ulaG and the ulaABCDEF operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790635, Length=256, Percent_Identity=41.015625, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI1789059, Length=262, Percent_Identity=27.8625954198473, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789519, Length=259, Percent_Identity=23.5521235521236, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1789170, Length=241, Percent_Identity=24.4813278008299, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28393; Mature: 28393

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2 ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEAQRHRSLLDHLTSHTFITTNDYVKMLDISLSTARRDITKLAEEGRLKKIRNGAEVIN
CCHHHHHHHHHHHHHCCEEEEECCEEEEEEEHHHHHHHHHHHHHHCCHHHHHCCCCCEEE
FDSSLAATHAPSSFIPCETDIESYVAKKRIAKAAADMCEEHDSIIVSGSNTTFLMGEHLA
CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCHHH
HRDVQVVTNFMPLAYQLISQDHQSIIILGGQYLPERQITISPDEEAADDHKSRFVFFTGT
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCHHCCCCCCCEEEEEECC
GVTTAGVHTSDLLVYMAEKKLLEYGDRIVALIDSSKVGKHGGKLLATASQIDTLITDDGA
CCEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEHHHHHHEEECCCC
DPKVLDALRELGVKIQVV
CHHHHHHHHHCCCEEEEC
>Mature Secondary Structure
MNEAQRHRSLLDHLTSHTFITTNDYVKMLDISLSTARRDITKLAEEGRLKKIRNGAEVIN
CCHHHHHHHHHHHHHCCEEEEECCEEEEEEEHHHHHHHHHHHHHHCCHHHHHCCCCCEEE
FDSSLAATHAPSSFIPCETDIESYVAKKRIAKAAADMCEEHDSIIVSGSNTTFLMGEHLA
CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCHHH
HRDVQVVTNFMPLAYQLISQDHQSIIILGGQYLPERQITISPDEEAADDHKSRFVFFTGT
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCHHCCCCCCCEEEEEECC
GVTTAGVHTSDLLVYMAEKKLLEYGDRIVALIDSSKVGKHGGKLLATASQIDTLITDDGA
CCEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEHHHHHHEEECCCC
DPKVLDALRELGVKIQVV
CHHHHHHHHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA