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The map label for this gene is ompA [H]

Identifier: 218708117

GI number: 218708117

Start: 27210

End: 27851

Strand: Direct

Name: ompA [H]

Synonym: VS_0029

Alternate gene names: 218708117

Gene position: 27210-27851 (Clockwise)

Preceding gene: 218708116

Following gene: 218708122

Centisome position: 0.82

GC content: 40.97

Gene sequence:

>642_bases
ATGAAAACGCTTATATCTGTTATGTCTTTATTTACTCTGTCGTTTTCTATACTGGCAGCCCCTTTAAAACCAGATACTAA
CGAACTACTTTATCATTACTGCCATATGGGCGACTCTGAACTAGAGAAGACGGTAACGATCGGTCAGGGGAAGAAAGTGA
TGTATCACCAAGGCCCATTCATGCAAGTGAACGCAAGCACAGCTAATCAAGCGATTAAAAATCTGATTCAAGATAAGTTA
ACTCAAGTATCAGAAAGTGCTGATTGCGCACAATACTTACTAAGTCGAACTAAATTTGTAGAAGGTAAGTTGGCTCGTGA
GGTGTTGGCTCGCGTGACTTTTGATTTCGATGACGATGAACTGAATCAAAAATCTCGTTATTTATTGTTAAAACTTATAG
CTAAACTTGAACATCAAACTCCCGAATTTATCGTCACGGGGAATACCGACTCAAAAGGTAGTGATAGTTACAACTTAAGC
TTAGGCTTGCAGCGCTCGAATGCTGTTGTTGGGTATTTGAAAGAGCAAGGCGTAAATATTGAAGACCTGACAGTGAGTTC
ACAAGGTGAGGCGAACCCAGTGCAGAGTAACGAGACTGAATCCGGTCGCCATAACAATCGCAGGGTTGATATGCACTCTT
AA

Upstream 100 bases:

>100_bases
AATAAAATTTTGGGATTAATTACGGAAGAAGTGGGTCACTTAGCGCAATAGAGGTATGTGACATCCTTTTTATTAACTGA
ATATTATTAAGAGAGCAAAA

Downstream 100 bases:

>100_bases
CCCTGCCCTACAAATTTAACTTGTTGGGAGCAGTATTTTTAAAACGACACCCACGGATGGGTTATCTGATTGCTCAAACC
AGATTGTCCCTTTGTAGCTA

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKTLISVMSLFTLSFSILAAPLKPDTNELLYHYCHMGDSELEKTVTIGQGKKVMYHQGPFMQVNASTANQAIKNLIQDKL
TQVSESADCAQYLLSRTKFVEGKLAREVLARVTFDFDDDELNQKSRYLLLKLIAKLEHQTPEFIVTGNTDSKGSDSYNLS
LGLQRSNAVVGYLKEQGVNIEDLTVSSQGEANPVQSNETESGRHNNRRVDMHS

Sequences:

>Translated_213_residues
MKTLISVMSLFTLSFSILAAPLKPDTNELLYHYCHMGDSELEKTVTIGQGKKVMYHQGPFMQVNASTANQAIKNLIQDKL
TQVSESADCAQYLLSRTKFVEGKLAREVLARVTFDFDDDELNQKSRYLLLKLIAKLEHQTPEFIVTGNTDSKGSDSYNLS
LGLQRSNAVVGYLKEQGVNIEDLTVSSQGEANPVQSNETESGRHNNRRVDMHS
>Mature_213_residues
MKTLISVMSLFTLSFSILAAPLKPDTNELLYHYCHMGDSELEKTVTIGQGKKVMYHQGPFMQVNASTANQAIKNLIQDKL
TQVSESADCAQYLLSRTKFVEGKLAREVLARVTFDFDDDELNQKSRYLLLKLIAKLEHQTPEFIVTGNTDSKGSDSYNLS
LGLQRSNAVVGYLKEQGVNIEDLTVSSQGEANPVQSNETESGRHNNRRVDMHS

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23790; Mature: 23790

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLISVMSLFTLSFSILAAPLKPDTNELLYHYCHMGDSELEKTVTIGQGKKVMYHQGPF
CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHEEECCCCCEEEEECCCE
MQVNASTANQAIKNLIQDKLTQVSESADCAQYLLSRTKFVEGKLAREVLARVTFDFDDDE
EEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LNQKSRYLLLKLIAKLEHQTPEFIVTGNTDSKGSDSYNLSLGLQRSNAVVGYLKEQGVNI
HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEEECCCCEEEEHHHCCCCE
EDLTVSSQGEANPVQSNETESGRHNNRRVDMHS
EEEEECCCCCCCCCCCCCCCCCCCCCCEECCCC
>Mature Secondary Structure
MKTLISVMSLFTLSFSILAAPLKPDTNELLYHYCHMGDSELEKTVTIGQGKKVMYHQGPF
CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHEEECCCCCEEEEECCCE
MQVNASTANQAIKNLIQDKLTQVSESADCAQYLLSRTKFVEGKLAREVLARVTFDFDDDE
EEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LNQKSRYLLLKLIAKLEHQTPEFIVTGNTDSKGSDSYNLSLGLQRSNAVVGYLKEQGVNI
HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEEECCCCEEEEHHHCCCCE
EDLTVSSQGEANPVQSNETESGRHNNRRVDMHS
EEEEECCCCCCCCCCCCCCCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]