Click here to switch to the map view.

The map label for this gene is gspE [C]

Identifier: 218708110

GI number: 218708110

Start: 20915

End: 22198

Strand: Direct

Name: gspE [C]

Synonym: VS_0022

Alternate gene names: 218708110

Gene position: 20915-22198 (Clockwise)

Preceding gene: 218708109

Following gene: 218708111

Centisome position: 0.63

GC content: 45.4

Gene sequence:

>1284_bases
ATGGAACATGCACAGCGCATTTATTTACAACTGCGTAAGCAGATCTTTGATGCACTTGATGCCAGTGTTATTGAAAGCTT
ACCGCGTCTAGAGTTAGAAGCTCAGTTAGCTAGCGCAGTTGATATGCTAGTGAGTCGAGATCAGTTATCTATTTCATCAC
TGGCAAAATCAGAATATGTCACCAGCATGGTACATGAGTTAGTTGGCCTCGGGCCTTTGCAGGTGTTGATGGATGATGAC
TCGATCACCGACATCATGATCAATGGCCCACAACAGGTTTATATTGAGCGTCATGGCTTAGTCGAGAAAGCACCTGTTCG
ATTTATCGATGAGAAGCAGTTGCTTGATATTGCGAAGCGCATCGCTAGTCGTGTTGGGCGCAGGGTCGATGAGTCTTCTC
CTACTTGTGATGCCCGGTTAGATGATGGTAGCCGTGTGAATATTGTCATTCCTCCTATCACATTGGAAGGGACGTCAATC
TCGATTCGTAAGTTTCAAAAGCAAAGTATTGGTTTTGAAGAATTAGTTGAGTTTGGGTCTCTTACTCCCGATATGGCAGG
TTTACTTCAGTTAGCTGCACGTTGCCGACTCAATATTCTTGTATCTGGTGGTACGGGATCGGGAAAAACAACGTTACTTA
ATGCTTTATCACAGCATATATCAGAGGGTGAACGAACCGTCACTATTGAAGATACCGCTGAGTTAAGACTTCAGCAGTCA
CATGTTGTTCGAATGGAAACTCGTCATGAGGGCATTGAAGGGACGGGGGCTATTACCGCTCGAGATTTAGTGATTAATTC
ACTGCGAATGCGCCCAGACCGAATTATTGTGGGTGAATGCCGTGGTGGTGAAGCGTTTGAAATGCTGCAAGCCATGAATA
CTGGGCACGATGGTTCAATGTCTACGTTGCACGCCAATACACCACGAGATGCTTTGGCTCGTGTTGAATCAATGGTGATG
ATGGCGACCAATAATTTGCCCTTAGAAGCGATCCGCCGCTCAATTGTAAGCGCGGTCGATTTAGTCGTTCAGGTCAGCCG
ATTGCATGATGGTTCTCGAAAGATCATGAATATCACTGAAGTGGTCGGTATTGAGGGAAGCAACGTGGTGTTAGAAGAGT
TGTTCTCTTTCCAAACTTCACCTCACAGCCCTGATGGTCGCATTCGAGGTAGTTATGTGACATCTGGTGTTATGGCTCGT
TCTGCGCTTTATGAAAAAGCCCGTTTCTTTGGTGTAGAGCAGAAGTTAACTCAAGTGATTGAGTCTATGACACTCAATCA
ATAG

Upstream 100 bases:

>100_bases
ATACGGACTGCAAACGTTAGTTGCCTTATTGATGGGAGAGAAAGTTGCGGAAAAAACAGCATTTTCATTCTTCCAGTGGT
TAAAACGGTAAGGGGACGAT

Downstream 100 bases:

>100_bases
GAGTGAGACATGTATTGTTTGATTATTTTGGGTGGGGCAATACTCATGATTGTAGCGCTTAAGCCGAATAGAGCTCCTTC
TGTTGATGAGTATTTATCAC

Product: putative bacterial type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MEHAQRIYLQLRKQIFDALDASVIESLPRLELEAQLASAVDMLVSRDQLSISSLAKSEYVTSMVHELVGLGPLQVLMDDD
SITDIMINGPQQVYIERHGLVEKAPVRFIDEKQLLDIAKRIASRVGRRVDESSPTCDARLDDGSRVNIVIPPITLEGTSI
SIRKFQKQSIGFEELVEFGSLTPDMAGLLQLAARCRLNILVSGGTGSGKTTLLNALSQHISEGERTVTIEDTAELRLQQS
HVVRMETRHEGIEGTGAITARDLVINSLRMRPDRIIVGECRGGEAFEMLQAMNTGHDGSMSTLHANTPRDALARVESMVM
MATNNLPLEAIRRSIVSAVDLVVQVSRLHDGSRKIMNITEVVGIEGSNVVLEELFSFQTSPHSPDGRIRGSYVTSGVMAR
SALYEKARFFGVEQKLTQVIESMTLNQ

Sequences:

>Translated_427_residues
MEHAQRIYLQLRKQIFDALDASVIESLPRLELEAQLASAVDMLVSRDQLSISSLAKSEYVTSMVHELVGLGPLQVLMDDD
SITDIMINGPQQVYIERHGLVEKAPVRFIDEKQLLDIAKRIASRVGRRVDESSPTCDARLDDGSRVNIVIPPITLEGTSI
SIRKFQKQSIGFEELVEFGSLTPDMAGLLQLAARCRLNILVSGGTGSGKTTLLNALSQHISEGERTVTIEDTAELRLQQS
HVVRMETRHEGIEGTGAITARDLVINSLRMRPDRIIVGECRGGEAFEMLQAMNTGHDGSMSTLHANTPRDALARVESMVM
MATNNLPLEAIRRSIVSAVDLVVQVSRLHDGSRKIMNITEVVGIEGSNVVLEELFSFQTSPHSPDGRIRGSYVTSGVMAR
SALYEKARFFGVEQKLTQVIESMTLNQ
>Mature_427_residues
MEHAQRIYLQLRKQIFDALDASVIESLPRLELEAQLASAVDMLVSRDQLSISSLAKSEYVTSMVHELVGLGPLQVLMDDD
SITDIMINGPQQVYIERHGLVEKAPVRFIDEKQLLDIAKRIASRVGRRVDESSPTCDARLDDGSRVNIVIPPITLEGTSI
SIRKFQKQSIGFEELVEFGSLTPDMAGLLQLAARCRLNILVSGGTGSGKTTLLNALSQHISEGERTVTIEDTAELRLQQS
HVVRMETRHEGIEGTGAITARDLVINSLRMRPDRIIVGECRGGEAFEMLQAMNTGHDGSMSTLHANTPRDALARVESMVM
MATNNLPLEAIRRSIVSAVDLVVQVSRLHDGSRKIMNITEVVGIEGSNVVLEELFSFQTSPHSPDGRIRGSYVTSGVMAR
SALYEKARFFGVEQKLTQVIESMTLNQ

Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 47046; Mature: 47046

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHAQRIYLQLRKQIFDALDASVIESLPRLELEAQLASAVDMLVSRDQLSISSLAKSEYV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TSMVHELVGLGPLQVLMDDDSITDIMINGPQQVYIERHGLVEKAPVRFIDEKQLLDIAKR
HHHHHHHHCCCCEEEEECCCCCCEEEECCCCEEEEECCCCCCCCCCHHCCHHHHHHHHHH
IASRVGRRVDESSPTCDARLDDGSRVNIVIPPITLEGTSISIRKFQKQSIGFEELVEFGS
HHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCCHHHHHHHHCCCHHHHHHHCC
LTPDMAGLLQLAARCRLNILVSGGTGSGKTTLLNALSQHISEGERTVTIEDTAELRLQQS
CCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH
HVVRMETRHEGIEGTGAITARDLVINSLRMRPDRIIVGECRGGEAFEMLQAMNTGHDGSM
HHEEEHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCC
STLHANTPRDALARVESMVMMATNNLPLEAIRRSIVSAVDLVVQVSRLHDGSRKIMNITE
CEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VVGIEGSNVVLEELFSFQTSPHSPDGRIRGSYVTSGVMARSALYEKARFFGVEQKLTQVI
HHCCCCCHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESMTLNQ
HHHCCCC
>Mature Secondary Structure
MEHAQRIYLQLRKQIFDALDASVIESLPRLELEAQLASAVDMLVSRDQLSISSLAKSEYV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TSMVHELVGLGPLQVLMDDDSITDIMINGPQQVYIERHGLVEKAPVRFIDEKQLLDIAKR
HHHHHHHHCCCCEEEEECCCCCCEEEECCCCEEEEECCCCCCCCCCHHCCHHHHHHHHHH
IASRVGRRVDESSPTCDARLDDGSRVNIVIPPITLEGTSISIRKFQKQSIGFEELVEFGS
HHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCCHHHHHHHHCCCHHHHHHHCC
LTPDMAGLLQLAARCRLNILVSGGTGSGKTTLLNALSQHISEGERTVTIEDTAELRLQQS
CCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH
HVVRMETRHEGIEGTGAITARDLVINSLRMRPDRIIVGECRGGEAFEMLQAMNTGHDGSM
HHEEEHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCC
STLHANTPRDALARVESMVMMATNNLPLEAIRRSIVSAVDLVVQVSRLHDGSRKIMNITE
CEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VVGIEGSNVVLEELFSFQTSPHSPDGRIRGSYVTSGVMARSALYEKARFFGVEQKLTQVI
HHCCCCCHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESMTLNQ
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]