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The map label for this gene is patH [H]

Identifier: 218708097

GI number: 218708097

Start: 6439

End: 7269

Strand: Reverse

Name: patH [H]

Synonym: VS_0009

Alternate gene names: 218708097

Gene position: 7269-6439 (Counterclockwise)

Preceding gene: 218708103

Following gene: 218708096

Centisome position: 0.22

GC content: 43.32

Gene sequence:

>831_bases
ATGGTTAATAACATCTGGTTATTTATTCTATTGAGCATTTTCCCAGTAACATCCAACCCTATAAATATAAGGAGTTACCA
AATGAATAACTGGATTAAGGCTGCAATTGCGGCTATCGCACTCTCTGCTGCTACTGTTCAAGCCGCGACTGAAGTTAAAG
TCGGCATGTCTGGTCGCTACTTCCCGTTTACGTTCGTTAAACAAGACCAACTACAAGGTTTTGAAGTGGATTTATGGGAT
GAGATCGGTAAACGTAACGATTACAAGGTTGAATACGTAACGGCAAACTTCTCTGGTCTTTTTGGTCTTCTTGAAACGGG
TCGTATCGATACCATTTCAAACCAAATTACAATGACGGATGCACGTAAAGCGAAATACCTATTCGCAGACCCATACGTAG
TAGACGGTGCACAAATTACCGTTCGTAAAGGTAATGACAGCATTAAGGGTATCGAAGACCTTGATGGCAAGACGGTTGCG
GTAAACCTAGGTTCAAACTTTGAACAACTGCTTCGCAGCTACGATAAAGATGGCAAGATCAATGTTAAAACCTACGATAC
AGGTATTGAGCATGATGTCGCTCTTGGTCGTGCCGATGCATTCGTAATGGATCGCCTATCAGCACTAGAGCTTATCAAGA
AGACGGGGCTACCATTACAGCTAGCGGGTCAGCCATTCGAAACCATTGAAAACGCTTGGCCTTTCGTGGACAACGACAAC
GGTAAAAAACTGCAAGCAGAAGTAAACCAAGCATTAGCAGCAATGCGCGCAGATGGTACGCTAGAAAGTATCTCTCAGAA
ATGGTTTGGTGCGGACATTACTCAGAAGTAA

Upstream 100 bases:

>100_bases
TCGGTGGATCCACACATCTTGCCCCTAATTTACTCACACAATGATCCACTTATGCCCGGATCCTTGCTAGTTATCCCCAA
ATCGAGAATGCGATCTGGTT

Downstream 100 bases:

>100_bases
TCACTCACTATCTCCATTCGAGGCCCACTGCTTTACACGGCGGTGGGCTTTTTGCTTTTGTGCACTGATTAAAAGCCTGA
TAGAACAGTATTTCCAAATA

Product: putative amino-acid ABC transporter-binding protein PatH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MVNNIWLFILLSIFPVTSNPINIRSYQMNNWIKAAIAAIALSAATVQAATEVKVGMSGRYFPFTFVKQDQLQGFEVDLWD
EIGKRNDYKVEYVTANFSGLFGLLETGRIDTISNQITMTDARKAKYLFADPYVVDGAQITVRKGNDSIKGIEDLDGKTVA
VNLGSNFEQLLRSYDKDGKINVKTYDTGIEHDVALGRADAFVMDRLSALELIKKTGLPLQLAGQPFETIENAWPFVDNDN
GKKLQAEVNQALAAMRADGTLESISQKWFGADITQK

Sequences:

>Translated_276_residues
MVNNIWLFILLSIFPVTSNPINIRSYQMNNWIKAAIAAIALSAATVQAATEVKVGMSGRYFPFTFVKQDQLQGFEVDLWD
EIGKRNDYKVEYVTANFSGLFGLLETGRIDTISNQITMTDARKAKYLFADPYVVDGAQITVRKGNDSIKGIEDLDGKTVA
VNLGSNFEQLLRSYDKDGKINVKTYDTGIEHDVALGRADAFVMDRLSALELIKKTGLPLQLAGQPFETIENAWPFVDNDN
GKKLQAEVNQALAAMRADGTLESISQKWFGADITQK
>Mature_276_residues
MVNNIWLFILLSIFPVTSNPINIRSYQMNNWIKAAIAAIALSAATVQAATEVKVGMSGRYFPFTFVKQDQLQGFEVDLWD
EIGKRNDYKVEYVTANFSGLFGLLETGRIDTISNQITMTDARKAKYLFADPYVVDGAQITVRKGNDSIKGIEDLDGKTVA
VNLGSNFEQLLRSYDKDGKINVKTYDTGIEHDVALGRADAFVMDRLSALELIKKTGLPLQLAGQPFETIENAWPFVDNDN
GKKLQAEVNQALAAMRADGTLESISQKWFGADITQK

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=226, Percent_Identity=39.8230088495575, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1787031, Length=255, Percent_Identity=32.5490196078431, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788649, Length=258, Percent_Identity=27.906976744186, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788648, Length=232, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787085, Length=244, Percent_Identity=25.8196721311475, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787088, Length=244, Percent_Identity=26.6393442622951, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 30632; Mature: 30632

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNNIWLFILLSIFPVTSNPINIRSYQMNNWIKAAIAAIALSAATVQAATEVKVGMSGRY
CCCCHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
FPFTFVKQDQLQGFEVDLWDEIGKRNDYKVEYVTANFSGLFGLLETGRIDTISNQITMTD
CEEEEEEHHCCCCCEEEHHHHHCCCCCEEEEEEEECCHHHHHHHHCCCEEECCCEEEEEC
ARKAKYLFADPYVVDGAQITVRKGNDSIKGIEDLDGKTVAVNLGSNFEQLLRSYDKDGKI
CCCCEEEEECCEEECCCEEEEECCCCCCCCHHHCCCCEEEEECCCCHHHHHHHCCCCCEE
NVKTYDTGIEHDVALGRADAFVMDRLSALELIKKTGLPLQLAGQPFETIENAWPFVDNDN
EEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHCCCCEECCC
GKKLQAEVNQALAAMRADGTLESISQKWFGADITQK
CCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVNNIWLFILLSIFPVTSNPINIRSYQMNNWIKAAIAAIALSAATVQAATEVKVGMSGRY
CCCCHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
FPFTFVKQDQLQGFEVDLWDEIGKRNDYKVEYVTANFSGLFGLLETGRIDTISNQITMTD
CEEEEEEHHCCCCCEEEHHHHHCCCCCEEEEEEEECCHHHHHHHHCCCEEECCCEEEEEC
ARKAKYLFADPYVVDGAQITVRKGNDSIKGIEDLDGKTVAVNLGSNFEQLLRSYDKDGKI
CCCCEEEEECCEEECCCEEEEECCCCCCCCHHHCCCCEEEEECCCCHHHHHHHCCCCCEE
NVKTYDTGIEHDVALGRADAFVMDRLSALELIKKTGLPLQLAGQPFETIENAWPFVDNDN
EEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHCCCCEECCC
GKKLQAEVNQALAAMRADGTLESISQKWFGADITQK
CCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA