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The map label for this gene is patM [H]

Identifier: 218708096

GI number: 218708096

Start: 5633

End: 6304

Strand: Reverse

Name: patM [H]

Synonym: VS_0008

Alternate gene names: 218708096

Gene position: 6304-5633 (Counterclockwise)

Preceding gene: 218708097

Following gene: 218708095

Centisome position: 0.19

GC content: 47.32

Gene sequence:

>672_bases
ATGGGATTTGACTTTAATTACATGCTAGAGCTGTTGCCAATACTACTGAAGTATTTAGGCACCACGATGGAGATGGCGAC
TTGGGGCTTGTTCTTTGCTCTGATCCTGTCTCTGATACTGGCGAATATTCGTGTATTCAAAATCCCAGTACTCGACCAAC
TGAGCCAGCTGTACATTAGCTTCTTTCGAGGCACACCACTGTTGGTACAGCTTTTCCTCCTTTATTACGGCTTACCACAA
GTATTCCCGTGGATGGTTGGGTTGGATGCTTTCAGCGCCGCTGTAATTGGCTTAACCCTGCACTTTGCCGCGTATATGGC
AGAAAGTATTCGTGCCGCGATTATCGGTATTGATCGTAGCCAGATGGAAGCCAGCCTCTCAGTCGGTATGACAACCAGTC
AAGCGATGCGCCGAGTGATCTTGCCGCAAGCAACCCGCGTAGCACTGCCTTCTTTAATGAACTATTTCATCGACATGATC
AAGTCGACTTCACTTGCATTCACCTTAGGTGTAGCCGAAATCATGGCTAAAGCTCAGATGGAAGCTTCTTCAAGTTTCCG
CTTCTTCGAGGCTTTCTTAGCAGTCGCGCTGATTTACTGGGGCGTAGTGGTTATCCTCACTCGTATTCAAATTTGGGCCG
AAGTGAAACTGAATAAGGCGTATGTACGATGA

Upstream 100 bases:

>100_bases
ACACGGCGGTGGGCTTTTTGCTTTTGTGCACTGATTAAAAGCCTGATAGAACAGTATTTCCAAATAGAACAACACTTCCA
ATACTAATACGAGATAGATT

Downstream 100 bases:

>100_bases
TCAAATTACAAAATATCCACAAGCAGTTTGGTGACACCGAAGTTTTGAAAGGGATCGACCTAGAAATCAAACAAGGTGAG
ATAATTGTCATCATAGGTTC

Product: putative amino-acid ABC transporter permease PatM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MGFDFNYMLELLPILLKYLGTTMEMATWGLFFALILSLILANIRVFKIPVLDQLSQLYISFFRGTPLLVQLFLLYYGLPQ
VFPWMVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMRRVILPQATRVALPSLMNYFIDMI
KSTSLAFTLGVAEIMAKAQMEASSSFRFFEAFLAVALIYWGVVVILTRIQIWAEVKLNKAYVR

Sequences:

>Translated_223_residues
MGFDFNYMLELLPILLKYLGTTMEMATWGLFFALILSLILANIRVFKIPVLDQLSQLYISFFRGTPLLVQLFLLYYGLPQ
VFPWMVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMRRVILPQATRVALPSLMNYFIDMI
KSTSLAFTLGVAEIMAKAQMEASSSFRFFEAFLAVALIYWGVVVILTRIQIWAEVKLNKAYVR
>Mature_222_residues
GFDFNYMLELLPILLKYLGTTMEMATWGLFFALILSLILANIRVFKIPVLDQLSQLYISFFRGTPLLVQLFLLYYGLPQV
FPWMVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMRRVILPQATRVALPSLMNYFIDMIK
STSLAFTLGVAEIMAKAQMEASSSFRFFEAFLAVALIYWGVVVILTRIQIWAEVKLNKAYVR

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=212, Percent_Identity=48.1132075471698, Blast_Score=188, Evalue=3e-49,
Organism=Escherichia coli, GI1787030, Length=207, Percent_Identity=33.3333333333333, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787086, Length=208, Percent_Identity=36.5384615384615, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI1786874, Length=159, Percent_Identity=34.5911949685535, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI87082239, Length=205, Percent_Identity=30.7317073170732, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788645, Length=181, Percent_Identity=33.1491712707182, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788646, Length=186, Percent_Identity=27.4193548387097, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1786873, Length=182, Percent_Identity=30.2197802197802, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI48994930, Length=121, Percent_Identity=31.404958677686, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787087, Length=213, Percent_Identity=24.4131455399061, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25098; Mature: 24967

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFDFNYMLELLPILLKYLGTTMEMATWGLFFALILSLILANIRVFKIPVLDQLSQLYIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHH
FFRGTPLLVQLFLLYYGLPQVFPWMVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDRS
HHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
QMEASLSVGMTTSQAMRRVILPQATRVALPSLMNYFIDMIKSTSLAFTLGVAEIMAKAQM
HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EASSSFRFFEAFLAVALIYWGVVVILTRIQIWAEVKLNKAYVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GFDFNYMLELLPILLKYLGTTMEMATWGLFFALILSLILANIRVFKIPVLDQLSQLYIS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHH
FFRGTPLLVQLFLLYYGLPQVFPWMVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDRS
HHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
QMEASLSVGMTTSQAMRRVILPQATRVALPSLMNYFIDMIKSTSLAFTLGVAEIMAKAQM
HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EASSSFRFFEAFLAVALIYWGVVVILTRIQIWAEVKLNKAYVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA