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The map label for this gene is ydhY [H]

Identifier: 218705172

GI number: 218705172

Start: 1988629

End: 1989255

Strand: Reverse

Name: ydhY [H]

Synonym: ECUMN_1963

Alternate gene names: 218705172

Gene position: 1989255-1988629 (Counterclockwise)

Preceding gene: 218705173

Following gene: 218705171

Centisome position: 38.24

GC content: 48.64

Gene sequence:

>627_bases
ATGAACCCGGTTGATCGTCCACTATTAGATATTGGCTTAACGCGATTAGAATTCTTGCGTATATCAGGAAAAGGCCTCGC
TGGTTTAACAATTGCCCCTGCGTTACTGTCACTTTTGGGTTGCAAACAGGAAGATATTGATAGCGGCACAGTAGGGTTGA
TAAATACACCCAAAGGGGTGCTGGTGACCCAACGTGCTCGATGCACGGGTTGCCACCGCTGTGAAATCTCTTGTACCAAC
TTCAACGATGGTTCAGTAGGGACATTCTTCTCCCGTATCAAAATCCATCGCAATTATTTCTTTGGCGACAACGGGGTTGG
CTCTGGCGGCGGCCTGTATGGCGATCTCAACTATACCGCGGACACCTGCCGTCAATGCAAAGAGCCGCAATGCATGAACG
TCTGCCCGATTGGTGCGATTACCTGGCAGCAGAAAGAAGGCTGTATTACCGTCGATCATAAACGTTGTATTGGCTGTAGC
GCCTGTACTACGGCATGCCCGTGGATGATGGCCACCGTAAATACCGAAAGTAAAAAATCCTCGAAATGTGTGTTATGCGG
TGAATGCGCATACGCCTGCCCAACAGGGGCGTTAAAAATTATCGAGTGGAAAGATATTACTGTGTGA

Upstream 100 bases:

>100_bases
TATCTGGTGTTGGGGACAGAGTCAGCAGCGTATTAGTTGAATGCTTAATATCAGTCTGCTGAATTGTCAGCACTGTGTTT
GCGAAGAGGATGCGAAATAA

Downstream 100 bases:

>100_bases
ATCTTGCAAAGGAAAAAATCATGGCTAACGGTTGGACAGGTAATATATTAAGAGTCAATCTTACGACAGGAAATATTACC
CTCGAAGATTCCAGTAAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECAYACPTGALKIIEWKDITV

Sequences:

>Translated_208_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECAYACPTGALKIIEWKDITV
>Mature_208_residues
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTN
FNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCS
ACTTACPWMMATVNTESKKSSKCVLCGECAYACPTGALKIIEWKDITV

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787963, Length=208, Percent_Identity=99.5192307692308, Blast_Score=424, Evalue=1e-120,
Organism=Escherichia coli, GI1787872, Length=150, Percent_Identity=32, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI226510944, Length=152, Percent_Identity=30.2631578947368, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787122, Length=150, Percent_Identity=30.6666666666667, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082179, Length=163, Percent_Identity=26.9938650306748, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI2367245, Length=161, Percent_Identity=30.4347826086957, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87082180, Length=156, Percent_Identity=30.1282051282051, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI2367345, Length=164, Percent_Identity=28.0487804878049, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1789067, Length=174, Percent_Identity=28.735632183908, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790326, Length=182, Percent_Identity=24.1758241758242, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787478, Length=167, Percent_Identity=25.748502994012, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787749, Length=155, Percent_Identity=24.5161290322581, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 22416; Mature: 22416

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
10.6 %Cys+Met (Translated Protein)
8.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
10.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGV
CCCCCCHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCE
LVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTA
EEECCCCCCCCEEEEEEECCCCCCCHHHHEEEEEEEEEEEECCCCCCCCCCEEEECCCCH
DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKS
HHHHHCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCHHHHHHCCEEEEEECCCCCCC
SKCVLCGECAYACPTGALKIIEWKDITV
CCEEEECCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGV
CCCCCCHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCE
LVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTA
EEECCCCCCCCEEEEEEECCCCCCCHHHHEEEEEEEEEEEECCCCCCCCCCEEEECCCCH
DTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKS
HHHHHCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCHHHHHHCCEEEEEECCCCCCC
SKCVLCGECAYACPTGALKIIEWKDITV
CCEEEECCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]