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The map label for this gene is ydeR [H]

Identifier: 218704974

GI number: 218704974

Start: 1785762

End: 1786265

Strand: Reverse

Name: ydeR [H]

Synonym: ECUMN_1757

Alternate gene names: 218704974

Gene position: 1786265-1785762 (Counterclockwise)

Preceding gene: 218704975

Following gene: 218704973

Centisome position: 34.34

GC content: 44.64

Gene sequence:

>504_bases
ATGAAAAGACTTCACAAGAGGTTCCTGTTAGCTACGTTTTGCGCGTTATTCACAGCAACTCTCCAGGCCGCCGATGTCAC
TATCACTGTTAATGGTCGGGTAGTCGCTAAACCCTGCACTATTCAAACCAAAGAAGCTAACGTTAATCTCGGGGATCTTT
ATACGCGCAATCTGCAACAACCTGGTTCTGCATCAGGCTGGCACAATATTACTTTGTCATTAACCGATTGTCCGGTTGAA
ACAAGTGCAGTGACGGCAATCGTGACAGGTTCAACTGACAATACGGGTTATTACAAAAATGAAGGTACTGCCGAAAATAT
TCAGATAGAGCTAAGGGATGACCAGGATGCGACGTTAAAAAATGGCGATAGCAAAACGGTTATTGTTGATGAGATCACTC
GTAATGCACAGTTTCCACTTAAGGCAAGAGCTATCACGGTGAATGGAAACGCAAGCCAGGGAACGATCGAGGCGCTAATC
AATGTGATCTACACCTGGCAATAA

Upstream 100 bases:

>100_bases
TTACTCCGCTCGTCTGAAGTCAACTCAGAAGTCCGTCAATCCGGGACTGGTGAGGGCTTCGGCAACCTTTACCCTTGAAT
TTCAATAATCAGAGTCAGAT

Downstream 100 bases:

>100_bases
CGTCGATTCGATTTTCTTAGCCTCTTTTTAAATCAATTTTTTAACCTTAGGATATATCATGGGTAAAACAATAAGTATGA
AGCTTCTGTTCGGTATTTAT

Product: putative fimbrial-like adhesin exported protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVE
TSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDATLKNGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALI
NVIYTWQ

Sequences:

>Translated_167_residues
MKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVE
TSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDATLKNGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALI
NVIYTWQ
>Mature_167_residues
MKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVE
TSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDATLKNGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALI
NVIYTWQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1787780, Length=167, Percent_Identity=99.4011976047904, Blast_Score=342, Evalue=9e-96,
Organism=Escherichia coli, GI1790774, Length=166, Percent_Identity=57.8313253012048, Blast_Score=193, Evalue=5e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18175; Mature: 18175

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQ
CCHHHHHHHHHHHHHHHHHHHEECEEEEEECCEEEECCCEEEECCCCCCHHHHEECCCCC
PGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDATLK
CCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEECCCCCCCEEEEEEECCCCCEEC
NGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALINVIYTWQ
CCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHEEEEECC
>Mature Secondary Structure
MKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQ
CCHHHHHHHHHHHHHHHHHHHEECEEEEEECCEEEECCCEEEECCCCCCHHHHEECCCCC
PGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDATLK
CCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEECCCCCCCEEEEEEECCCCCEEC
NGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALINVIYTWQ
CCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]