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The map label for this gene is ycjD [H]

Identifier: 218704818

GI number: 218704818

Start: 1603252

End: 1603617

Strand: Reverse

Name: ycjD [H]

Synonym: ECUMN_1594

Alternate gene names: 218704818

Gene position: 1603617-1603252 (Counterclockwise)

Preceding gene: 218704819

Following gene: 218704817

Centisome position: 30.83

GC content: 51.37

Gene sequence:

>366_bases
GTGATGGATAAAATAAAATCAAATGCGCGTGATTTAAGACGCAATCTCACTTCGCAGGAACGAAAGCTCTGGCGATATCT
TCGCAGCCGACGTTTTGGTGATTTCAAATTTCGCCGTCAACATCCGGTGGGGAGCTACATTCTCGATTTTGCTTGCTGCT
CGGCGCGTGTAGTAGTTGAGCTGGATGGTGGGCAGCATGATTTGGCAGTTGCCTATGATTCCAGGCGCACTAGCTGGCTT
GAGTCGCAGGGCTGGACCGTGCTGCGTTTCTGGAATAACGAGATTGATTGTAATGAGGAGGCGGTGCTGGAGATTATTCT
GCAGGAACTGAACCGCCTGTCACCCTCACCCCAACCCTCTCCCTGA

Upstream 100 bases:

>100_bases
TTGACGGCGGATGCGTGGCGTAAAGATCGTTAATTTTCTGAATCCTCCTTCCAGATTATTCACCTCATTCTGACAAGAGA
TTAAATCTTGTCAGAATGAG

Downstream 100 bases:

>100_bases
AAGGGCGAGGGGGCCGACCGAGCCGAATAGCTGTTGTGGTGAAAACATGGAGGCGGATGATGAAGAATATTCGGCAAGGT
CTGAACCACCATTCACTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MMDKIKSNARDLRRNLTSQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWL
ESQGWTVLRFWNNEIDCNEEAVLEIILQELNRLSPSPQPSP

Sequences:

>Translated_121_residues
MMDKIKSNARDLRRNLTSQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWL
ESQGWTVLRFWNNEIDCNEEAVLEIILQELNRLSPSPQPSP
>Mature_121_residues
MMDKIKSNARDLRRNLTSQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWL
ESQGWTVLRFWNNEIDCNEEAVLEIILQELNRLSPSPQPSP

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=117, Percent_Identity=94.8717948717949, Blast_Score=229, Evalue=3e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 14286; Mature: 14286

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDKIKSNARDLRRNLTSQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVE
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEE
LDGGQHDLAVAYDSRRTSWLESQGWTVLRFWNNEIDCNEEAVLEIILQELNRLSPSPQPS
ECCCCCEEEEEECCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
P
C
>Mature Secondary Structure
MMDKIKSNARDLRRNLTSQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVE
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEE
LDGGQHDLAVAYDSRRTSWLESQGWTVLRFWNNEIDCNEEAVLEIILQELNRLSPSPQPS
ECCCCCEEEEEECCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]