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The map label for this gene is yccA

Identifier: 218704394

GI number: 218704394

Start: 1212940

End: 1213599

Strand: Reverse

Name: yccA

Synonym: ECUMN_1160

Alternate gene names: 218704394

Gene position: 1213599-1212940 (Counterclockwise)

Preceding gene: 218704395

Following gene: 218704393

Centisome position: 23.33

GC content: 51.36

Gene sequence:

>660_bases
ATGGATCGTATTGTTAGTTCTTCACATGACCGTACATCGCTGCTTAGCACCCATAAGGTGCTGCGTAATACCTATTTTCT
GCTGAGCCTGACGCTGGCCTTTTCGGCGATTACCGCAACTGCCAGTACGGTGCTGATGCTGCCATCTCCGGGTCTGATTC
TGACGCTGGTGGGTATGTATGGTTTGATGTTCCTGACCTATAAAACGGCGAATAAGCCGACCGGGATTATCTCCGCATTC
GCCTTTACCGGTTTTCTGGGATATATCCTCGGACCAATTCTGAACACCTACCTGTCCGCCGGAATGGGTGACGTAATCGC
TATGGCACTGGGCGGAACGGCGTTGGTGTTCTTCTGCTGCTCTGCGTATGTGCTGACCACCCGCAAAGATATGTCGTTCC
TCGGCGGTATGCTGATGGCGGGTATTGTGGTGGTGCTGATTGGTATGGTTGCTAATATCTTCCTGCAACTGCCTGCTCTG
CATCTGGCGATCAGCGCGGTCTTCATTCTGATCTCCTCTGGCGCTATTTTGTTTGAAACCAGCAACATCATTCATGGCGG
TGAAACGAACTATATTCGTGCCACAGTTAGCCTGTATGTTTCGCTGTACAACATCTTCGTCAGCCTGCTGAGCATTCTGG
GCTTCGCCAGCCGCGATTAA

Upstream 100 bases:

>100_bases
TTCCAGATCAAATGCGTAAAGATGGGTAAAACTTCTGGGTGCCCTTACGCATTATCATTATGCTGCTTAATTAATTACAT
CTGTCATAGAGAGTGACTCA

Downstream 100 bases:

>100_bases
TCTCGCCCAGGGTTACTTACCGAGCCTCGCTTTATGCGGGGCTTTGTTTTTTGTTACACTGCCGCCAGTCTGATTAAGGT
AGTAATAATTATGCTGATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAF
AFTGFLGYILGPILNTYLSAGMGDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
HLAISAVFILISSGAILFETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD

Sequences:

>Translated_219_residues
MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAF
AFTGFLGYILGPILNTYLSAGMGDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
HLAISAVFILISSGAILFETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
>Mature_219_residues
MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAF
AFTGFLGYILGPILNTYLSAGMGDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
HLAISAVFILISSGAILFETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family

Homologues:

Organism=Escherichia coli, GI1787205, Length=219, Percent_Identity=100, Blast_Score=427, Evalue=1e-121,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCCA_ECOL6 (P0AAC7)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_753035.1
- ProteinModelPortal:   P0AAC7
- EnsemblBacteria:   EBESCT00000045096
- GeneID:   1035757
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c1110
- GeneTree:   EBGT00050000008938
- HOGENOM:   HBG595196
- OMA:   TYALLSM
- ProtClustDB:   PRK10447
- InterPro:   IPR006213
- InterPro:   IPR006214
- PANTHER:   PTHR23291

Pfam domain/function: PF01027 UPF0005

EC number: NA

Molecular weight: Translated: 23363; Mature: 23363

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS01243 BI1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x2b457188)-; HASH(0x2c176534)-; HASH(0x2b5285c0)-; HASH(0x2c3be468)-; HASH(0x2c266ba8)-; HASH(0x2cfccc20)-; HASH(0x2cfd2c64)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
GLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGMGDVIAMALGGTALVFFCC
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
SAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
SNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
>Mature Secondary Structure
MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
GLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGMGDVIAMALGGTALVFFCC
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
SAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
SNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157