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The map label for this gene is ybgP [H]

Identifier: 218704034

GI number: 218704034

Start: 848524

End: 849255

Strand: Reverse

Name: ybgP [H]

Synonym: ECUMN_0795

Alternate gene names: 218704034

Gene position: 849255-848524 (Counterclockwise)

Preceding gene: 218704035

Following gene: 218704033

Centisome position: 16.33

GC content: 49.32

Gene sequence:

>732_bases
ATGACATTTATGAAAGGACTTCCCCTTTTGTTGTTGATTGCCAGTCTGTGCAGCTACGCTGCGCTACAACCCGATCGCAC
TCGCATTGTGTTTAACGCTAATGATAAAGCCACCAGCCTACGAGTGGATAATCGTAGCGATAAACTCCCCTACCTCGCTT
ATTCCTGGCTCGAAAATGAAAAAGGGGAGAAAAGCGACGATCTTCTGGTCGCCCTGCCACCGATACAACGTCTGGAACCG
AAAGCAACAACGCAGGTGCGGATAGTCAAGCAAGCCTCGACCGCGAAATTACCGGGCGATCGCGAAACGCTATTTTTCTA
CAATATGCGTGAAATTCCTCCCTCCCCAGAAAAAAACAGCGGCCATGCCGTTCTGCAGGTCGCCATCCAGAGTCGTATCA
AGGTGTTCTGGAGACCGTCCGCGTTACGCAAGAAAGCAGGAGAAAAAGTCGAGCTACAGTTACAAGTCAGCCAGCAGGGC
AATCAACTTAACTTAAAAAACCCGACCGGCTATTACCTGACAATCGCCTACCTGGGACGAAATGAGCAAGGTGTTCTCCC
GGGCTTCAAAACCGTGATGGTTGCGCCTTTTAGTACAGTAATTACAAACACCGGAAGTTATAGCGGCAGTCAGTTTTATC
TCGGTTATATGGATGATTACGGCGCGTTACGCATGACGACGCTCAATTGCAACGGACATTGCCGTTTACAAGCAGTGGAG
GCGAAGAAATGA

Upstream 100 bases:

>100_bases
CTGGGGTGATAGCCAGCGTTGCTCGATCCATCTTCCTGAACATATGGAAGACACCGCAAATCGCCTGATTTTACCTTGTC
ATTAATTAAGGAAATGAAAA

Downstream 100 bases:

>100_bases
GTACTGGCAAAGGATTGTTGCTCGTCATCTGTCTGTTATTTCTGCCATTGAAGTCTGCGCTAGCGCTGAACTGCTATTTT
GGTACTTCCGGCGGAACGGT

Product: putative exported chaperone, PapD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTFMKGLPLLLLIASLCSYAALQPDRTRIVFNANDKATSLRVDNRSDKLPYLAYSWLENEKGEKSDDLLVALPPIQRLEP
KATTQVRIVKQASTAKLPGDRETLFFYNMREIPPSPEKNSGHAVLQVAIQSRIKVFWRPSALRKKAGEKVELQLQVSQQG
NQLNLKNPTGYYLTIAYLGRNEQGVLPGFKTVMVAPFSTVITNTGSYSGSQFYLGYMDDYGALRMTTLNCNGHCRLQAVE
AKK

Sequences:

>Translated_243_residues
MTFMKGLPLLLLIASLCSYAALQPDRTRIVFNANDKATSLRVDNRSDKLPYLAYSWLENEKGEKSDDLLVALPPIQRLEP
KATTQVRIVKQASTAKLPGDRETLFFYNMREIPPSPEKNSGHAVLQVAIQSRIKVFWRPSALRKKAGEKVELQLQVSQQG
NQLNLKNPTGYYLTIAYLGRNEQGVLPGFKTVMVAPFSTVITNTGSYSGSQFYLGYMDDYGALRMTTLNCNGHCRLQAVE
AKK
>Mature_242_residues
TFMKGLPLLLLIASLCSYAALQPDRTRIVFNANDKATSLRVDNRSDKLPYLAYSWLENEKGEKSDDLLVALPPIQRLEPK
ATTQVRIVKQASTAKLPGDRETLFFYNMREIPPSPEKNSGHAVLQVAIQSRIKVFWRPSALRKKAGEKVELQLQVSQQGN
QLNLKNPTGYYLTIAYLGRNEQGVLPGFKTVMVAPFSTVITNTGSYSGSQFYLGYMDDYGALRMTTLNCNGHCRLQAVEA
KK

Specific function: Could be required for the biogenesis of the putative ybgD fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786936, Length=242, Percent_Identity=87.603305785124, Blast_Score=448, Evalue=1e-127,
Organism=Escherichia coli, GI87082203, Length=236, Percent_Identity=38.9830508474576, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI1788677, Length=225, Percent_Identity=37.7777777777778, Blast_Score=160, Evalue=7e-41,
Organism=Escherichia coli, GI1790771, Length=197, Percent_Identity=33.502538071066, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789532, Length=219, Percent_Identity=30.5936073059361, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786743, Length=231, Percent_Identity=34.1991341991342, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786333, Length=222, Percent_Identity=28.8288288288288, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787171, Length=206, Percent_Identity=33.495145631068, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788428, Length=226, Percent_Identity=30.0884955752212, Blast_Score=97, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27209; Mature: 27078

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFMKGLPLLLLIASLCSYAALQPDRTRIVFNANDKATSLRVDNRSDKLPYLAYSWLENE
CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEECCCC
KGEKSDDLLVALPPIQRLEPKATTQVRIVKQASTAKLPGDRETLFFYNMREIPPSPEKNS
CCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCC
GHAVLQVAIQSRIKVFWRPSALRKKAGEKVELQLQVSQQGNQLNLKNPTGYYLTIAYLGR
CCEEEEEEEHHCEEEEECCHHHHHHCCCEEEEEEEEECCCCEEEECCCCCEEEEEEEECC
NEQGVLPGFKTVMVAPFSTVITNTGSYSGSQFYLGYMDDYGALRMTTLNCNGHCRLQAVE
CCCCCCCCCCEEEECCCHHEEECCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEEEC
AKK
CCC
>Mature Secondary Structure 
TFMKGLPLLLLIASLCSYAALQPDRTRIVFNANDKATSLRVDNRSDKLPYLAYSWLENE
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEECCCC
KGEKSDDLLVALPPIQRLEPKATTQVRIVKQASTAKLPGDRETLFFYNMREIPPSPEKNS
CCCCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCC
GHAVLQVAIQSRIKVFWRPSALRKKAGEKVELQLQVSQQGNQLNLKNPTGYYLTIAYLGR
CCEEEEEEEHHCEEEEECCHHHHHHCCCEEEEEEEEECCCCEEEECCCCCEEEEEEEECC
NEQGVLPGFKTVMVAPFSTVITNTGSYSGSQFYLGYMDDYGALRMTTLNCNGHCRLQAVE
CCCCCCCCCCEEEECCCHHEEECCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEEEC
AKK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]