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The map label for this gene is ydfO [H]

Identifier: 218703853

GI number: 218703853

Start: 664741

End: 665166

Strand: Reverse

Name: ydfO [H]

Synonym: ECUMN_0609

Alternate gene names: 218703853

Gene position: 665166-664741 (Counterclockwise)

Preceding gene: 218703854

Following gene: 218703852

Centisome position: 12.79

GC content: 31.46

Gene sequence:

>426_bases
ATGGAAGGTACTACAATGGCTCAGGTTGCCATTTTTAAACAAATATTCGATAAAGTGCGAAATAATTTAAACTATCACTG
GTTTTATTCTGAACTAAAACGTCACAATGTCTCACATTACATTTACTATTTAGCCACAGAGAATATTCATCTTGTTCTTG
AAAACGATAATACGGTTTTAATAAAAGGACAGAGTAAGGTTGTAAATGTAAGATTTTCAAAAAATAAATGCCTTATAGAA
GCCACCTTAAAAGGATTCAAATCAGGAGAGTTATCATTTTACGAATACAGGAAAAATCTTGCTACAGCAGGGGTTTTCAG
ATGGATTACAAATATCCACGAAAACAAAAGGTATTACTATACCTTTGATAATTCATTACTCTTTACTGAGAACATTCAGA
ACACTACACAAATATTTCCGCACTAA

Upstream 100 bases:

>100_bases
AAACAAAGAAAAGAGTGACATTACTGAATTGCTCAGAAAGCAGGTCAGACCAGATTGAAGCAATTTAGATAATCGTGCAG
ACTAGGTACCTTCATATCAC

Downstream 100 bases:

>100_bases
ATCATAACGTCCGGTTTCTTCCGTGCCAGAACCGGACTCGCTGGCATGATGAAATATGTGTACCCGGTAACCCCGGTGTG
CATCGTTATTGATTATTCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MEGTTMAQVAIFKQIFDKVRNNLNYHWFYSELKRHNVSHYIYYLATENIHLVLENDNTVLIKGQSKVVNVRFSKNKCLIE
ATLKGFKSGELSFYEYRKNLATAGVFRWITNIHENKRYYYTFDNSLLFTENIQNTTQIFPH

Sequences:

>Translated_141_residues
MEGTTMAQVAIFKQIFDKVRNNLNYHWFYSELKRHNVSHYIYYLATENIHLVLENDNTVLIKGQSKVVNVRFSKNKCLIE
ATLKGFKSGELSFYEYRKNLATAGVFRWITNIHENKRYYYTFDNSLLFTENIQNTTQIFPH
>Mature_141_residues
MEGTTMAQVAIFKQIFDKVRNNLNYHWFYSELKRHNVSHYIYYLATENIHLVLENDNTVLIKGQSKVVNVRFSKNKCLIE
ATLKGFKSGELSFYEYRKNLATAGVFRWITNIHENKRYYYTFDNSLLFTENIQNTTQIFPH

Specific function: Unknown

COG id: COG5562

COG function: function code R; Phage envelope protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybcV and ycgX [H]

Homologues:

Organism=Escherichia coli, GI87081931, Length=135, Percent_Identity=75.5555555555556, Blast_Score=218, Evalue=1e-58,
Organism=Escherichia coli, GI87081758, Length=135, Percent_Identity=77.7777777777778, Blast_Score=216, Evalue=4e-58,
Organism=Escherichia coli, GI1787408, Length=129, Percent_Identity=44.1860465116279, Blast_Score=129, Evalue=8e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009833
- ProDom:   PD021249 [H]

Pfam domain/function: PF07166 DUF1398 [H]

EC number: NA

Molecular weight: Translated: 16801; Mature: 16801

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGTTMAQVAIFKQIFDKVRNNLNYHWFYSELKRHNVSHYIYYLATENIHLVLENDNTVL
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCEEEEEEEECCEEEEEECCCEEE
IKGQSKVVNVRFSKNKCLIEATLKGFKSGELSFYEYRKNLATAGVFRWITNIHENKRYYY
EECCCEEEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
TFDNSLLFTENIQNTTQIFPH
EECCCEEEECCCCCCEECCCC
>Mature Secondary Structure
MEGTTMAQVAIFKQIFDKVRNNLNYHWFYSELKRHNVSHYIYYLATENIHLVLENDNTVL
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCEEEEEEEECCEEEEEECCCEEE
IKGQSKVVNVRFSKNKCLIEATLKGFKSGELSFYEYRKNLATAGVFRWITNIHENKRYYY
EECCCEEEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
TFDNSLLFTENIQNTTQIFPH
EECCCEEEECCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]