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The map label for this gene is rdgA [H]

Identifier: 218703832

GI number: 218703832

Start: 651596

End: 652351

Strand: Reverse

Name: rdgA [H]

Synonym: ECUMN_0588

Alternate gene names: 218703832

Gene position: 652351-651596 (Counterclockwise)

Preceding gene: 218703839

Following gene: 218703831

Centisome position: 12.54

GC content: 45.77

Gene sequence:

>756_bases
ATGGTTGTTTTTAGTCAACAACCATTTTCGTTTGATGGAATAAAACCTTGGTTGTACATTTGGACTATGAAAACAACACT
CTCAGAAAGACTTAAAGAAGCCAGATTAGCGCGAGGCCTTACACAAAAGGCGCTTGGGGATTTGGTCGGGGTTAGCCAGG
CTGCTATTCAGAAAATCGAAACAGGGAAAGCTAATCAAACAACTAAAATCGTGGAGATCGCGAACGCTTTGGGTGTGCGC
GCAGAATGGTTATCTTCTGGCGTTGGAAATATGTCAGACAGTACAGTGCAACCAATACAATCAACTGTCAGCCATTCCAA
ATACTTCAAGATTGACGTTCTTGATATAGAAGTCAGTGCTGGGCCGGGAGTCATCAACCGTGAGTTTGTAGAAGTTCTAC
GCTCGGTTGAGTACTCGTTTGACGATGCTCGTCACATGTTCGATGGTAGGAAGGCGGAAAATATCCGCATCATTAACGTG
CGTGGTGACAGCATGTCAGGAACGATCGAACCAGGTGATCTGCTGTTCGTTGATATCACAGTTAAATCTTTCGACGGTGA
TGGTATCTATGCGTTTCTGTACGACGACACAGCCCATGTAAAGCGCCTGCAAATGATGAAGGATAAGCTGCTGGTCATCT
CTGATAACAAAAGCTACTCACCGTGGGACCCGATCGAGAAAGACGAGATGAACCGGGTGTTCATCTTCGGTAAGGTTATT
GGGAGCATGCCGCAGACGTACAGGAAGCATGGTTAA

Upstream 100 bases:

>100_bases
GCAGCGCCCAGTTTCTTTTGTGAACCAACGATATTGATCGCTGTTTTGATAGCTGGGTTCATAACAACCTCCGTGGTTAA
TTTGAATCAAGATTAAAACT

Downstream 100 bases:

>100_bases
TAATTAGCCTGTAGCTTTTTAAGGCACACTCTTTTCAAGAATATTAAATAGAACACTATATGGCATAAACAAGGACTTAG
GATGGAAAAGCCTAGCTTCC

Product: regulatory protein CI from bacteriophage origin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MVVFSQQPFSFDGIKPWLYIWTMKTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVEIANALGVR
AEWLSSGVGNMSDSTVQPIQSTVSHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINV
RGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI
GSMPQTYRKHG

Sequences:

>Translated_251_residues
MVVFSQQPFSFDGIKPWLYIWTMKTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVEIANALGVR
AEWLSSGVGNMSDSTVQPIQSTVSHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINV
RGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI
GSMPQTYRKHG
>Mature_251_residues
MVVFSQQPFSFDGIKPWLYIWTMKTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVEIANALGVR
AEWLSSGVGNMSDSTVQPIQSTVSHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINV
RGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI
GSMPQTYRKHG

Specific function: Regulates pectin lyase production in response to DNA damage [H]

COG id: COG2932

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 28165; Mature: 28165

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVFSQQPFSFDGIKPWLYIWTMKTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIE
CEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
TGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQSTVSHSKYFKIDVLDIEVSA
CCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEEECC
GPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDIT
CCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEE
VKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI
EEEECCCEEEEEEECCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCEEEEEHHHH
GSMPQTYRKHG
HCCHHHHHHCC
>Mature Secondary Structure
MVVFSQQPFSFDGIKPWLYIWTMKTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIE
CEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
TGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQSTVSHSKYFKIDVLDIEVSA
CCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEEECC
GPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDIT
CCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEE
VKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVI
EEEECCCEEEEEEECCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCEEEEEHHHH
GSMPQTYRKHG
HCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7715460 [H]