| Definition | Escherichia coli UMN026 chromosome, complete genome. |
|---|---|
| Accession | NC_011751 |
| Length | 5,202,090 |
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The map label for this gene is ybbO [H]
Identifier: 218703784
GI number: 218703784
Start: 605323
End: 606132
Strand: Reverse
Name: ybbO [H]
Synonym: ECUMN_0540
Alternate gene names: 218703784
Gene position: 606132-605323 (Counterclockwise)
Preceding gene: 218703785
Following gene: 218703783
Centisome position: 11.65
GC content: 53.95
Gene sequence:
>810_bases ATGACTCATAAAGCAACGGAGATCCTGACAGGTAAAGTTATGCAAAAATCGGTCTTAATTACCGGATGTTCCAGTGGAAT TGGCCTGGAAAGCGCGCTCGAATTAAAACGCCAGGGTTTTCATGTGCTGGCAGGTTGCCGGAAACCGGATGATGTTGAGC GCATGAACAGCATGGGATTTACCGGCGTGTTGATCGATCTGGATTCACCAGAAAGTGTTGATCGCGCAGCCGACGAAGTG ATCGCCCTGACCGATAATTGTCTGTATGGGATCTTTAACAATGCCGGATTCGGCATGTATGGCCCCCTTTCCACCATCAG CCGTGCGCAGATGGAACAGCAGTTTTCTGCCAACTTTTTCGGCGCTCACCAGCTCACCATGCGCCTGTTACCCGCGATGT TACCGCACGGTGAAGGGCGTATTGTGATGACCTCATCGGTGATGGGATTAATCTCCACGCCGGGTCGCGGCGCTTACGCA GCCAGTAAATATGCGCTGGAGGCGTGGTCGGATGCGCTGCGCATGGAGCTGCGCCACAGCGGAGTTAAAGTTAGCCTGAT CGAACCCGGTCCCATTCGTACTCGCTTCACCGACAACGTCAACCAGACGCAAAGTGATAAACCAGTCGAAAATCCTGGCA TCGCCGCCCGCTTTACGTTGGGACCGGAAGCGGTGGTCGACAAAGTACGCCATGCTTTTATTAGCGAGAAACCGAAGATG CGCTATCCGGTAACGCTGGTGACCTGGGCAGTAATGGTGCTTAAGCGCCTGCTGCCGGGGCGCGTGATGGACAAAATATT GCAGGGGTGA
Upstream 100 bases:
>100_bases AAGCCACAATGGATGCAGGATGACGGTATTCATCCCAACCGCGACGCCCAGCCGTTTATTGCCGACTGGATGGCGAAGCA GTTGCAGCCTTTAGTAAATC
Downstream 100 bases:
>100_bases GTTGAAGCGCGCGCTTAAGCCCCCATGTCAAAGAAAATATCGACAACAGAGAGCGACTCCATGTCCGTAGAAAATATTGT CAACATTAACGAATCTAACC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEV IALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYA ASKYALEAWSDALRMELRHSGVKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKM RYPVTLVTWAVMVLKRLLPGRVMDKILQG
Sequences:
>Translated_269_residues MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEV IALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYA ASKYALEAWSDALRMELRHSGVKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKM RYPVTLVTWAVMVLKRLLPGRVMDKILQG >Mature_268_residues THKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEVI ALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAA SKYALEAWSDALRMELRHSGVKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKMR YPVTLVTWAVMVLKRLLPGRVMDKILQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=38.8297872340425, Blast_Score=122, Evalue=3e-28, Organism=Homo sapiens, GI50726952, Length=186, Percent_Identity=38.7096774193548, Blast_Score=115, Evalue=3e-26, Organism=Homo sapiens, GI40548397, Length=262, Percent_Identity=30.9160305343511, Blast_Score=115, Evalue=5e-26, Organism=Homo sapiens, GI214010158, Length=262, Percent_Identity=30.9160305343511, Blast_Score=115, Evalue=5e-26, Organism=Homo sapiens, GI214010156, Length=262, Percent_Identity=30.9160305343511, Blast_Score=115, Evalue=5e-26, Organism=Homo sapiens, GI22758144, Length=262, Percent_Identity=30.9160305343511, Blast_Score=115, Evalue=5e-26, Organism=Homo sapiens, GI150247226, Length=254, Percent_Identity=33.4645669291339, Blast_Score=112, Evalue=2e-25, Organism=Homo sapiens, GI22507405, Length=286, Percent_Identity=30.7692307692308, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI44680136, Length=289, Percent_Identity=29.4117647058824, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI44680133, Length=289, Percent_Identity=29.4117647058824, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI17738292, Length=289, Percent_Identity=29.4117647058824, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI19743808, Length=281, Percent_Identity=31.3167259786477, Blast_Score=105, Evalue=4e-23, Organism=Homo sapiens, GI119392083, Length=213, Percent_Identity=37.0892018779343, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI223718074, Length=195, Percent_Identity=34.3589743589744, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI7706318, Length=269, Percent_Identity=26.0223048327138, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=31.3131313131313, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI157739938, Length=193, Percent_Identity=32.1243523316062, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI142976729, Length=260, Percent_Identity=27.6923076923077, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI4504503, Length=206, Percent_Identity=31.0679611650485, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI40807363, Length=254, Percent_Identity=30.3149606299213, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI210032110, Length=191, Percent_Identity=29.3193717277487, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI32483357, Length=189, Percent_Identity=24.8677248677249, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI32455239, Length=190, Percent_Identity=29.4736842105263, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI5031765, Length=190, Percent_Identity=29.4736842105263, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI4503817, Length=227, Percent_Identity=27.3127753303965, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI1786701, Length=269, Percent_Identity=99.6282527881041, Blast_Score=557, Evalue=1e-160, Organism=Escherichia coli, GI87082100, Length=206, Percent_Identity=30.5825242718447, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789378, Length=213, Percent_Identity=27.6995305164319, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787335, Length=192, Percent_Identity=25.5208333333333, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87082160, Length=190, Percent_Identity=24.7368421052632, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI115534660, Length=287, Percent_Identity=30.3135888501742, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI32563809, Length=303, Percent_Identity=26.4026402640264, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17507613, Length=303, Percent_Identity=26.4026402640264, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI193210355, Length=264, Percent_Identity=31.0606060606061, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17557780, Length=297, Percent_Identity=28.6195286195286, Blast_Score=95, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17570069, Length=194, Percent_Identity=32.4742268041237, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71997402, Length=194, Percent_Identity=29.8969072164948, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560676, Length=239, Percent_Identity=28.0334728033473, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193203117, Length=275, Percent_Identity=27.6363636363636, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193203115, Length=265, Percent_Identity=27.1698113207547, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17559962, Length=203, Percent_Identity=29.5566502463054, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322067, Length=189, Percent_Identity=30.6878306878307, Blast_Score=75, Evalue=8e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=27.0935960591133, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=32.9896907216495, Blast_Score=100, Evalue=8e-22, Organism=Drosophila melanogaster, GI24651139, Length=237, Percent_Identity=31.6455696202532, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI21356301, Length=222, Percent_Identity=28.3783783783784, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI45554248, Length=200, Percent_Identity=33, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640117, Length=200, Percent_Identity=33, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28571526, Length=186, Percent_Identity=31.7204301075269, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24643142, Length=205, Percent_Identity=26.8292682926829, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24644339, Length=190, Percent_Identity=29.4736842105263, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI19922066, Length=185, Percent_Identity=27.5675675675676, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21357041, Length=188, Percent_Identity=29.2553191489362, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29397; Mature: 29265
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGF CCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCC TGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFF EEEEEECCCCHHHHHHHHHEEEECCCCEEEHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC GAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHS CHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC GVKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKM CCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCC RYPVTLVTWAVMVLKRLLPGRVMDKILQG CCCHHHHHHHHHHHHHHCCHHHHHHHHCC >Mature Secondary Structure THKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGF CCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCC TGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGPLSTISRAQMEQQFSANFF EEEEEECCCCHHHHHHHHHEEEECCCCEEEHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC GAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHS CHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC GVKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPKM CCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCC RYPVTLVTWAVMVLKRLLPGRVMDKILQG CCCHHHHHHHHHHHHHHCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]