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The map label for this gene is ygcU

Identifier: 218701256

GI number: 218701256

Start: 3057678

End: 3059132

Strand: Reverse

Name: ygcU

Synonym: ECIAI39_2954

Alternate gene names: 218701256

Gene position: 3059132-3057678 (Counterclockwise)

Preceding gene: 218701257

Following gene: 218701255

Centisome position: 59.61

GC content: 50.38

Gene sequence:

>1455_bases
ATGTCTTTATCTCGCGCAGCGATTGTCGACCAGCTAAAGGAAATTGTTGGTGCAGATCGCGTAATTACCGATGAAACAGT
ATTAAAGAAAAACAGTATTGACCGTTTTCGCAAATTTCCGGATATTCATGGCATTTATACTTTGCCGATTCCGGCAGCGG
TCGTAAAACTCGGTTCCACAGAACAAGTATCCCGTGTGCTGAATTTTATGAATGCGCACAAAATTAACGGTGTGCCGCGT
ACCGGTGCTTCCGCCACTGAAGGCGGGCTGGAAACCGTTGTGGAAAACTCGGTAGTGCTTGATGGCTCTGCAATGAATCA
AATCATTAATATTGATATAGAGAATATGCAGGCGACGGCGCAATGTGGCGTTCCGCTGGAAGTGCTGGAAAACGCTTTGC
GTGAAAAAGGTTACACCACGGGGCACTCTCCGCAGTCAAAACCGTTGGCGCAGATGGGTGGACTGGTGGCGACCCGCAGT
ATCGGGCAGTTCTCCACACTCTACGGCGCAATCGAAGATATGGTCGTTGGTCTGGAAGCGGTACTGGCAGATGGTACCGT
CACACGTATTAAAAACGTGCCACGCCGCGCGGCTGGCCCGGACATTCGTCACATCATCATCGGCAACGAAGGTGCACTGT
GCTATATCACTGAAGTAACAGTGAAAATCTTTAAATTCACCCCGGAAAACAACCTCTTCTACGGCTATATCCTGGAAGAT
ATGAAAACCGGCTTCAACATCCTGCGTGAAATCATGGTGGAAGGGTATCGTCCGTCGATCGCTCGTTTATATGACGCTGA
AGATGGCACCCAACACTTCACCCATTTTGCCGATGGTAAATGCGTGCTTATCTTTATGGCTGAAGGTAACCCTCGCATTG
CGAAGGCGACGGGTGAAGGGATTGCTGAAATCGTGGCGCGCTACCCGCAATGCCAGCGCGTGGACAGCAAGCTGATCGAA
ACCTGGTTTAATCACCTGAACTGGGGGCCGGATAAAGTGGCCGCTGAACGTGTGCAGATCCTCAAAACCGGCAACATGGG
CTTTACCACCGAAGTGTCCGGCTGCTGGAGCTGCATTCACGAAATCTACGAAAGCGTTATTAACCGTATTCGTACCGAGT
TCCCGCACGCCGACGACATCACCATGCTGGGCGGTCACTCCTCTCATAGCTATCAGAACGGTACCAACATGTACTTCGTC
TACGACTACAACGTCGTTGACTGTAAGCCGGAAGAGGAAATCGACAAGTACCACAATCCGCTCAACAAAATCATCTGCGA
AGAAACCATTCGTCTCGGCGGTTCGATGGTGCACCACCACGGTATCGGTAAACATCGCGTTCACTGGAGCAAACTGGAAC
ACGGCAGCGCGTGGGCGTTGCTGGAAGGGCTGAAAAAGCAGTTCGATCCTAATGGCATTATGAACACGGGTACTATCTAT
CCGATTGAAAAATAA

Upstream 100 bases:

>100_bases
AGTGGTTGATGGCGGTTATTTAGTGCGCTAATCCATAACGGTGGTTTCTGTTTTCTCTTATTAATGATTATTCCATTTTT
ATTATCAGGAAGGAATTACT

Downstream 100 bases:

>100_bases
TGTGTCAGGCAGCGTTCCGCGATGACGGTGCGTTGCCTTTTCGGCTTCTCAGGCGAGAAGCCGTTCTTATTACCGGACAA
TGAAGGGGTAAAGATGAACA

Product: putative FAD containing dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPR
TGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRS
IGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILED
MKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIE
TWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFV
YDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIY
PIEK

Sequences:

>Translated_484_residues
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPR
TGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRS
IGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILED
MKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIE
TWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFV
YDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIY
PIEK
>Mature_483_residues
SLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRT
GASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSI
GQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDM
KTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIET
WFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVY
DYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYP
IEK

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI4501993, Length=456, Percent_Identity=28.7280701754386, Blast_Score=152, Evalue=9e-37,
Organism=Homo sapiens, GI37595756, Length=220, Percent_Identity=27.7272727272727, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI119964728, Length=202, Percent_Identity=27.2277227722772, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI48994907, Length=484, Percent_Identity=99.5867768595041, Blast_Score=1004, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17556096, Length=462, Percent_Identity=27.7056277056277, Blast_Score=164, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI71992373, Length=492, Percent_Identity=24.390243902439, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71992381, Length=485, Percent_Identity=23.0927835051546, Blast_Score=81, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6320027, Length=175, Percent_Identity=32, Blast_Score=94, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6320023, Length=169, Percent_Identity=30.1775147928994, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6320764, Length=179, Percent_Identity=27.3743016759777, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24653753, Length=486, Percent_Identity=25.9259259259259, Blast_Score=155, Evalue=6e-38,
Organism=Drosophila melanogaster, GI18921117, Length=169, Percent_Identity=30.1775147928994, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24639277, Length=169, Percent_Identity=30.1775147928994, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24639275, Length=169, Percent_Identity=30.1775147928994, Blast_Score=78, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 53733; Mature: 53602

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGST
CCCHHHHHHHHHHHHHCCCCEECCHHHHHHCCHHHHHCCCCCCCEEECCHHHHHHHCCCH
EQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCEEECCHHHHHEEEEEECCCCHHH
QCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEA
HCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHH
VLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILED
HHCCCHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEEHHH
MKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEG
HHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHEECCCCEEEEEEECCCCCEEECCCHH
IAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIH
HHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHH
EIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNP
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHCH
LNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIY
HHHHHHHHHHHHCCHHHHHCCCCCCCEEHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEE
PIEK
ECCC
>Mature Secondary Structure 
SLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGST
CCHHHHHHHHHHHHHCCCCEECCHHHHHHCCHHHHHCCCCCCCEEECCHHHHHHHCCCH
EQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCEEECCHHHHHEEEEEECCCCHHH
QCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEA
HCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHH
VLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILED
HHCCCHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEEHHH
MKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEG
HHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHEECCCCEEEEEEECCCCCEEECCCHH
IAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIH
HHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHH
EIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNP
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHCH
LNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIY
HHHHHHHHHHHHCCHHHHHCCCCCCCEEHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEE
PIEK
ECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]